Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs12175497	0.99[ASN][1000 genomes]
rs12176100	0.91[ASN][1000 genomes]
rs16892009	0.99[ASN][1000 genomes]
rs6917494	0.89[ASN][1000 genomes]
rs6938522	0.89[ASN][1000 genomes]
rs716951	0.96[ASN][1000 genomes]
rs716952	0.84[ASN][1000 genomes]
rs716953	0.86[ASN][1000 genomes]
rs72850612	0.99[ASN][1000 genomes]
rs72850620	1.00[AFR][1000 genomes]
rs72860021	0.86[ASN][1000 genomes]
rs72860024	0.86[ASN][1000 genomes]
rs72860026	0.86[ASN][1000 genomes]
rs72860027	0.85[ASN][1000 genomes]
rs72860061	0.97[ASN][1000 genomes]
rs72860064	0.99[ASN][1000 genomes]
rs72860068	0.99[ASN][1000 genomes]
rs72860072	0.99[ASN][1000 genomes]
rs7738339	0.99[ASN][1000 genomes]
rs7738352	0.86[ASN][1000 genomes]
rs7774367	0.97[ASN][1000 genomes]
rs9349118	0.97[ASN][1000 genomes]
rs9349119	0.97[ASN][1000 genomes]
rs9357304	0.99[ASN][1000 genomes]
rs9367005	1.00[AFR][1000 genomes]
rs9369113	0.85[ASN][1000 genomes]
rs9380850	0.85[ASN][1000 genomes]
rs9380851	0.89[ASN][1000 genomes]
rs9380852	0.98[ASN][1000 genomes]
rs9380853	0.99[ASN][1000 genomes]
rs9380854	0.91[ASN][1000 genomes]
rs9380855	0.99[ASN][1000 genomes]
rs9380856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380857	0.99[ASN][1000 genomes]
rs9380858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9471087	0.89[ASN][1000 genomes]
rs9471088	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830645	chr6:39227601-39408310	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv533806	chr6:39270073-39397337	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv885822	chr6:39327708-39721216	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39346400-39356800	Weak transcription	Fetal Kidney	kidney
2	chr6:39352800-39357400	Enhancers	Fetal Stomach	stomach
3	chr6:39353800-39357600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:39354000-39357200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:39355000-39357600	Enhancers	Brain Substantia Nigra	brain
6	chr6:39355200-39356400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:39355200-39357000	Enhancers	Brain Hippocampus Middle	brain
8	chr6:39355200-39357400	Enhancers	Brain Anterior Caudate	brain
9	chr6:39355400-39357000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:39355400-39357000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:39355600-39357200	Enhancers	Fetal Lung	lung
12	chr6:39356000-39364000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:39356000-39369600	Weak transcription	Brain Angular Gyrus	brain

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