Variant report

Variant	rs1887749
Chromosome Location	chr13:29705054-29705055
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1109007	0.87[ASN][1000 genomes]
rs1467578	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1467579	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1536717	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1536718	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1536719	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1536720	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1575301	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17072796	0.86[EUR][1000 genomes]
rs1887751	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1887752	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1927838	0.85[ASN][1000 genomes]
rs1927840	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1927842	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1927843	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927844	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1952421	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2025972	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2094557	0.81[EUR][1000 genomes]
rs2149322	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2182990	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2475529	0.84[ASN][1000 genomes]
rs2475530	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475531	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475532	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475533	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475534	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475536	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2475537	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479789	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479790	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479791	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479792	0.88[ASN][1000 genomes]
rs2479793	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479794	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479795	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479796	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479798	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479801	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2479803	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2987345	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3751402	0.81[EUR][1000 genomes]
rs3829381	0.81[EUR][1000 genomes]
rs4238115	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4365146	0.85[ASN][1000 genomes]
rs4432107	0.84[ASN][1000 genomes]
rs4769002	0.85[ASN][1000 genomes]
rs4769681	0.86[ASN][1000 genomes]
rs6490350	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6490351	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6490352	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6490355	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs656803	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs685778	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324366	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7324548	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7331539	0.85[ASN][1000 genomes]
rs7331934	0.85[ASN][1000 genomes]
rs7332351	0.85[ASN][1000 genomes]
rs7334488	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7336281	0.81[EUR][1000 genomes]
rs7981238	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7981689	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7982710	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7985792	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7986301	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7987444	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7994936	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7995588	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7999357	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7999521	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9314932	0.81[EUR][1000 genomes]
rs9314933	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9314934	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506098	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9506099	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9506100	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506101	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506102	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506103	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506105	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9506106	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506107	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506108	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9506110	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508268	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9508270	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508271	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508272	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508278	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508279	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9508281	0.81[ASN][1000 genomes]
rs9508284	0.84[ASN][1000 genomes]
rs9508285	0.86[ASN][1000 genomes]
rs9508288	0.86[ASN][1000 genomes]
rs9551602	0.81[EUR][1000 genomes]
rs9578073	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9579285	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9579286	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9579287	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9579288	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9634353	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29692600-29705600	Weak transcription	Right Ventricle	heart
2	chr13:29701400-29712000	Weak transcription	Fetal Heart	heart
3	chr13:29704600-29705400	Weak transcription	Left Ventricle	heart
4	chr13:29704600-29705600	Weak transcription	GM12878-XiMat	blood
5	chr13:29704600-29706600	Weak transcription	Aorta	Aorta

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