Variant report

Variant	rs9508285
Chromosome Location	chr13:29699881-29699882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1109007	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1887749	0.86[ASN][1000 genomes]
rs1927838	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1927840	0.81[ASN][1000 genomes]
rs1952421	0.87[ASN][1000 genomes]
rs2025972	0.82[ASN][1000 genomes]
rs4238115	0.81[ASN][1000 genomes]
rs4365146	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4432107	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4769002	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4769681	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6490355	0.81[ASN][1000 genomes]
rs7331539	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7331934	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332351	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7994936	0.81[ASN][1000 genomes]
rs7999357	0.86[ASN][1000 genomes]
rs7999521	0.86[ASN][1000 genomes]
rs9508281	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9508284	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9508288	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579284	0.83[ASN][1000 genomes]
rs9579290	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29692600-29703400	Weak transcription	Aorta	Aorta
2	chr13:29692600-29703800	Weak transcription	Left Ventricle	heart
3	chr13:29692600-29705600	Weak transcription	Right Ventricle	heart
4	chr13:29697800-29700200	Enhancers	Fetal Heart	heart
5	chr13:29699000-29700000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr13:29699000-29700600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:29699000-29700600	Enhancers	Primary B cells from peripheral blood	blood
8	chr13:29699000-29701400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr13:29699200-29700000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:29699200-29700000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr13:29699200-29700400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:29699400-29700600	Flanking Active TSS	Dnd41	blood
13	chr13:29699600-29700000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
14	chr13:29699600-29700000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr13:29699600-29700000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr13:29699600-29700400	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:29699600-29700400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr13:29699600-29700400	Active TSS	GM12878-XiMat	blood
19	chr13:29699600-29700600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr13:29699600-29700600	Weak transcription	Fetal Thymus	thymus
21	chr13:29699800-29700000	Enhancers	Primary T helper cells PMA-I stimulated	--

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