Variant report

Variant	rs1887936
Chromosome Location	chr14:32688188-32688189
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11622364	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11628544	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12590282	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12590692	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17098557	0.85[AMR][1000 genomes]
rs1965599	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34579438	0.85[AMR][1000 genomes]
rs58425212	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59484466	0.81[AMR][1000 genomes]
rs61201256	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61994817	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs61994818	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7149020	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158235	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32673600-32688200	Weak transcription	Left Ventricle	heart
2	chr14:32673600-32692800	Weak transcription	Psoas Muscle	Psoas
3	chr14:32675800-32694000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:32686800-32688200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:32686800-32694000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:32687000-32694000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:32687400-32688200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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