Variant report

Variant	rs58425212
Chromosome Location	chr14:32677853-32677854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11622364	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11628544	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12590282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590692	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17098557	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1887936	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1965599	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34579438	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59484466	0.85[AMR][1000 genomes]
rs61201256	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61994817	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61994818	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7149020	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7158235	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32673600-32688200	Weak transcription	Left Ventricle	heart
2	chr14:32673600-32692800	Weak transcription	Psoas Muscle	Psoas
3	chr14:32673800-32679200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:32673800-32682000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:32673800-32682000	Weak transcription	NHEK	skin
6	chr14:32674200-32679400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:32675800-32680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:32675800-32682000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:32675800-32694000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links