Variant report

Variant	rs1890141
Chromosome Location	chrX:110346014-110346015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs5943129	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428712	chrX:110184832-110358638	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110340000-110348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chrX:110340000-110351000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chrX:110340000-110353200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chrX:110340000-110374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chrX:110340400-110347600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chrX:110340400-110349400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chrX:110341800-110349000	Weak transcription	NH-A	brain
8	chrX:110342200-110348000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:110342400-110357800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chrX:110342600-110348200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chrX:110342800-110348200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chrX:110342800-110358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chrX:110342800-110362200	Weak transcription	Brain Angular Gyrus	brain
14	chrX:110344000-110349800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chrX:110344200-110347400	Weak transcription	Spleen	Spleen
16	chrX:110344400-110346600	Enhancers	Colon Smooth Muscle	Colon
17	chrX:110344600-110346400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chrX:110344600-110346600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chrX:110344600-110349000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chrX:110345000-110346400	Weak transcription	Fetal Muscle Trunk	muscle
21	chrX:110345000-110346400	Weak transcription	Pancreas	Pancrea
22	chrX:110345000-110348400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chrX:110345000-110348600	Weak transcription	Fetal Brain Male	brain
24	chrX:110345400-110346800	Enhancers	Rectal Smooth Muscle	rectum
25	chrX:110345600-110357800	Weak transcription	Placenta	Placenta
26	chrX:110345600-110406200	Weak transcription	Brain Germinal Matrix	brain
27	chrX:110345800-110346400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
28	chrX:110345800-110347200	Enhancers	Ovary	ovary
29	chrX:110345800-110349800	Strong transcription	Aorta	Aorta
30	chrX:110346000-110348200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chrX:110346000-110353600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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