Variant report

Variant	rs5943129
Chromosome Location	chrX:110353141-110353142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1890141	1.00[YRI][hapmap]
rs4893483	0.84[MKK][hapmap]
rs5943127	0.81[ASW][hapmap];0.82[LWK][hapmap]
rs5943128	0.86[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428712	chrX:110184832-110358638	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv869737	chrX:110346973-110376790	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110340000-110353200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chrX:110340000-110374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chrX:110342400-110357800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chrX:110342800-110358200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:110342800-110362200	Weak transcription	Brain Angular Gyrus	brain
6	chrX:110345600-110357800	Weak transcription	Placenta	Placenta
7	chrX:110345600-110406200	Weak transcription	Brain Germinal Matrix	brain
8	chrX:110346000-110353600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chrX:110347200-110355000	Weak transcription	Ovary	ovary
10	chrX:110347200-110372400	Weak transcription	Fetal Muscle Trunk	muscle
11	chrX:110347800-110371400	Weak transcription	HMEC	breast
12	chrX:110349600-110365800	Weak transcription	NH-A	brain
13	chrX:110349800-110355600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chrX:110349800-110358200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chrX:110349800-110371200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chrX:110349800-110375000	Weak transcription	Aorta	Aorta
17	chrX:110350600-110367000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chrX:110351400-110358000	Weak transcription	Fetal Muscle Leg	muscle
19	chrX:110351400-110368800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chrX:110351800-110419400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links