Variant report

Variant	rs5943128
Chromosome Location	chrX:110342594-110342595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs5943127	0.91[ASW][hapmap];0.95[LWK][hapmap];0.90[MKK][hapmap];0.94[YRI][hapmap]
rs5943129	0.86[LWK][hapmap]
rs945885	0.94[YRI][hapmap]
rs945886	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428712	chrX:110184832-110358638	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3337751	chrX:110217889-110429181	Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv869661	chrX:110337762-111084262	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110338400-110342800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chrX:110340000-110343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chrX:110340000-110345800	Weak transcription	Aorta	Aorta
4	chrX:110340000-110348400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chrX:110340000-110351000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:110340000-110353200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chrX:110340000-110374200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chrX:110340400-110347600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chrX:110340400-110349400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chrX:110341000-110342800	Active TSS	Brain Angular Gyrus	brain
11	chrX:110341200-110343600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chrX:110341200-110344400	Weak transcription	Brain Germinal Matrix	brain
13	chrX:110341400-110343400	Weak transcription	Pancreas	Pancrea
14	chrX:110341400-110343600	Weak transcription	Spleen	Spleen
15	chrX:110341400-110343800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chrX:110341600-110343000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chrX:110341800-110342600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chrX:110341800-110342600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chrX:110341800-110342600	Enhancers	Stomach Mucosa	stomach
20	chrX:110341800-110342800	Enhancers	Primary B cells from peripheral blood	blood
21	chrX:110341800-110342800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chrX:110341800-110349000	Weak transcription	NH-A	brain
23	chrX:110342000-110342800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chrX:110342200-110342600	Enhancers	H9 Cell Line	embryonic stem cell
25	chrX:110342200-110342600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chrX:110342200-110342600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
27	chrX:110342200-110342600	Enhancers	Placenta	Placenta
28	chrX:110342200-110343000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chrX:110342200-110343800	Weak transcription	Fetal Brain Male	brain
30	chrX:110342200-110344000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chrX:110342200-110348000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chrX:110342400-110342600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
33	chrX:110342400-110342600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chrX:110342400-110342600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
35	chrX:110342400-110342600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chrX:110342400-110342600	Enhancers	Primary monocytes fromperipheralblood	blood
37	chrX:110342400-110342600	Enhancers	GM12878-XiMat	blood
38	chrX:110342400-110342800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chrX:110342400-110343000	Enhancers	Primary T cells fromperipheralblood	blood
40	chrX:110342400-110357800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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