Variant report

Variant	rs1890580
Chromosome Location	chr6:159909398-159909399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12197760	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs192136	0.94[ASN][1000 genomes]
rs240837	0.94[ASN][1000 genomes]
rs240856	0.90[ASN][1000 genomes]
rs240858	0.89[ASN][1000 genomes]
rs240867	0.96[ASN][1000 genomes]
rs240868	0.96[ASN][1000 genomes]
rs4298371	0.83[ASN][1000 genomes]
rs4341030	0.83[ASN][1000 genomes]
rs4463282	0.85[ASN][1000 genomes]
rs4543397	0.83[ASN][1000 genomes]
rs4544936	0.87[ASN][1000 genomes]
rs4709337	0.94[ASN][1000 genomes]
rs6455646	0.87[ASN][1000 genomes]
rs6455647	0.87[ASN][1000 genomes]
rs6455648	0.88[ASN][1000 genomes]
rs6901745	0.87[ASN][1000 genomes]
rs720694	0.96[ASN][1000 genomes]
rs7772194	0.92[ASN][1000 genomes]
rs881625	0.90[ASN][1000 genomes]
rs881626	0.90[ASN][1000 genomes]
rs881627	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030483	chr6:159475679-159910480	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv538490	chr6:159475679-159910480	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv886800	chr6:159905527-159985424	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159904800-159916800	Weak transcription	Aorta	Aorta
2	chr6:159908400-159909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:159908800-159909400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:159908800-159909600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

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