Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12197760	0.80[ASN][1000 genomes]
rs1890580	0.92[ASN][1000 genomes]
rs192136	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs240837	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs240856	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs240858	0.81[ASN][1000 genomes]
rs240867	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs240868	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4298371	0.89[ASN][1000 genomes]
rs4341030	0.89[ASN][1000 genomes]
rs4463282	0.92[ASN][1000 genomes]
rs4543397	0.89[ASN][1000 genomes]
rs4544936	0.92[ASN][1000 genomes]
rs4709337	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6455646	0.92[ASN][1000 genomes]
rs6455647	0.92[ASN][1000 genomes]
rs6455648	0.93[ASN][1000 genomes]
rs6901745	0.92[ASN][1000 genomes]
rs720694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs881625	0.95[ASN][1000 genomes]
rs881626	0.95[ASN][1000 genomes]
rs881627	0.94[ASN][1000 genomes]
rs9456409	0.80[EUR][1000 genomes]
rs9456410	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030483	chr6:159475679-159910480	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv538490	chr6:159475679-159910480	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159886400-159890800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:159889600-159890600	Weak transcription	GM12878-XiMat	blood
3	chr6:159889800-159890800	Enhancers	Fetal Stomach	stomach
4	chr6:159889800-159892000	Enhancers	Fetal Intestine Small	intestine
5	chr6:159890200-159891000	Enhancers	Stomach Mucosa	stomach
6	chr6:159890200-159891400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:159890200-159891600	Enhancers	Fetal Intestine Large	intestine

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