Variant report

Variant	rs1890991
Chromosome Location	chr13:62353955-62353956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17203785	0.83[AMR][1000 genomes]
rs7320318	0.87[AMR][1000 genomes]
rs7321300	0.90[AMR][1000 genomes]
rs7327888	0.84[AMR][1000 genomes]
rs7982201	0.90[AMR][1000 genomes]
rs7987576	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8002436	0.90[AMR][1000 genomes]
rs9285231	0.86[AMR][1000 genomes]
rs9592130	0.90[AMR][1000 genomes]
rs9592131	0.90[AMR][1000 genomes]
rs9592139	0.90[AMR][1000 genomes]
rs9592140	0.86[AMR][1000 genomes]
rs9592141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9598342	0.87[AMR][1000 genomes]
rs9598346	0.84[AMR][1000 genomes]
rs9598347	0.87[AMR][1000 genomes]
rs9598355	0.86[AMR][1000 genomes]
rs9598357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9598362	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761266	chr13:61928642-62690828	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1038867	chr13:62302878-62594554	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832629	chr13:62320369-62497238	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62351600-62354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:62351800-62355200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:62352400-62357400	Weak transcription	Fetal Lung	lung
4	chr13:62353000-62354000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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