Variant report
| Variant | rs7321300 |
|---|---|
| Chromosome Location | chr13:62342337-62342338 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1890991 | 0.90[AMR][1000 genomes] |
| rs7320318 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7327888 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7982201 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7987576 | 0.86[AMR][1000 genomes] |
| rs8002436 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9285231 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9592130 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9592131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9592139 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9592140 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9592141 | 0.90[AMR][1000 genomes] |
| rs9598324 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9598325 | 0.82[EUR][1000 genomes] |
| rs9598326 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9598342 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9598346 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9598347 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9598355 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9598357 | 0.90[AMR][1000 genomes] |
| rs9598362 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761266 | chr13:61928642-62690828 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv948810 | chr13:62003256-62968196 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1038867 | chr13:62302878-62594554 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3415162 | chr13:62316000-62342581 | ZNF genes & repeats Weak transcription Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv832629 | chr13:62320369-62497238 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:62339600-62344800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
