Variant report

Variant	rs1891148
Chromosome Location	chr6:128754302-128754303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10428737	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12110431	0.91[AFR][1000 genomes]
rs17055854	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17361665	0.84[EUR][1000 genomes]
rs17459362	0.92[EUR][1000 genomes]
rs1891146	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1891147	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58395468	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59893653	0.87[EUR][1000 genomes]
rs66843622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6939023	0.92[EUR][1000 genomes]
rs722796	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72974018	0.82[EUR][1000 genomes]
rs72974046	0.97[EUR][1000 genomes]
rs72974053	0.97[EUR][1000 genomes]
rs72974060	0.97[EUR][1000 genomes]
rs72974074	0.97[EUR][1000 genomes]
rs7774606	0.92[AFR][1000 genomes]
rs9375564	0.89[AFR][1000 genomes]
rs946424	0.90[AFR][1000 genomes]
rs961292	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128739600-128755600	Weak transcription	Osteobl	bone
2	chr6:128739800-128762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:128740000-128756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:128740800-128777000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:128743600-128755200	Weak transcription	Brain Substantia Nigra	brain
6	chr6:128743600-128759400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:128743800-128756000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:128744400-128755200	Weak transcription	HepG2	liver
9	chr6:128744600-128758800	Weak transcription	HSMM	muscle
10	chr6:128748200-128759600	Weak transcription	Fetal Stomach	stomach
11	chr6:128748400-128754400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:128748600-128759200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:128748600-128759200	Weak transcription	Gastric	stomach
14	chr6:128748800-128756000	Weak transcription	Lung	lung
15	chr6:128748800-128759000	Weak transcription	Fetal Heart	heart
16	chr6:128748800-128759400	Weak transcription	Brain Anterior Caudate	brain
17	chr6:128749000-128754600	Weak transcription	Left Ventricle	heart
18	chr6:128749200-128758800	Weak transcription	Ovary	ovary
19	chr6:128752800-128758800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:128753000-128754600	Enhancers	HUVEC	blood vessel
21	chr6:128753200-128756600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:128753200-128756600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:128753200-128756600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:128753200-128777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:128753400-128754600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:128753400-128754800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:128753400-128754800	Enhancers	NHEK	skin
28	chr6:128753400-128756400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:128753400-128756600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr6:128753400-128759600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:128753600-128759200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:128753800-128755600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:128753800-128756600	Weak transcription	NHDF-Ad	bronchial
34	chr6:128754000-128754400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:128754000-128756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:128754200-128754600	Enhancers	Brain Angular Gyrus	brain

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