Variant report

Variant	rs961292
Chromosome Location	chr6:128751097-128751098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10428737	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1339193	1.00[CEU][hapmap]
rs1612415	0.85[CEU][hapmap]
rs17055854	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17361665	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17459362	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1891146	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1891147	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1891148	0.97[EUR][1000 genomes]
rs4466261	0.92[CEU][hapmap]
rs58395468	1.00[EUR][1000 genomes]
rs59893653	0.89[EUR][1000 genomes]
rs66843622	1.00[EUR][1000 genomes]
rs6939023	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs722796	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72972098	0.82[AMR][1000 genomes]
rs72974018	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72974028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72974031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72974039	1.00[AFR][1000 genomes]
rs72974041	1.00[AFR][1000 genomes]
rs72974042	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72974046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974074	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974081	0.81[EUR][1000 genomes]
rs7764930	1.00[CEU][hapmap]
rs953549	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128731000-128753400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:128732400-128752400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:128739600-128755600	Weak transcription	Osteobl	bone
4	chr6:128739800-128762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:128740000-128752800	Weak transcription	NH-A	brain
6	chr6:128740000-128756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:128740800-128777000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:128741800-128753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:128743600-128752200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:128743600-128755200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:128743600-128759400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:128743800-128753400	Weak transcription	NHEK	skin
13	chr6:128743800-128756000	Weak transcription	Fetal Intestine Large	intestine
14	chr6:128744200-128754200	Weak transcription	Brain Angular Gyrus	brain
15	chr6:128744400-128755200	Weak transcription	HepG2	liver
16	chr6:128744600-128758800	Weak transcription	HSMM	muscle
17	chr6:128747400-128753000	Weak transcription	NHDF-Ad	bronchial
18	chr6:128747800-128752600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:128748200-128759600	Weak transcription	Fetal Stomach	stomach
20	chr6:128748400-128754400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:128748600-128752200	Weak transcription	HSMMtube	muscle
22	chr6:128748600-128759200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:128748600-128759200	Weak transcription	Gastric	stomach
24	chr6:128748800-128756000	Weak transcription	Lung	lung
25	chr6:128748800-128759000	Weak transcription	Fetal Heart	heart
26	chr6:128748800-128759400	Weak transcription	Brain Anterior Caudate	brain
27	chr6:128749000-128754600	Weak transcription	Left Ventricle	heart
28	chr6:128749200-128758800	Weak transcription	Ovary	ovary
29	chr6:128750600-128752600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:128750600-128753800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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