Variant report

Variant	rs1891397
Chromosome Location	chr6:73533078-73533079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2840802	1.00[AMR][1000 genomes]
rs3005768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
4	chr6:73529800-73533600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:73529800-73534800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:73530600-73534400	Weak transcription	Fetal Heart	heart
7	chr6:73530600-73535200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73530800-73534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:73531000-73534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:73531000-73535200	Weak transcription	HSMMtube	muscle
11	chr6:73531200-73535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:73531800-73535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:73532000-73542200	Weak transcription	HSMM	muscle
14	chr6:73532200-73534800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:73532400-73539800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:73532600-73533400	Enhancers	Psoas Muscle	Psoas
17	chr6:73532600-73533600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr6:73532800-73534200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:73532800-73534400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:73532800-73534600	Weak transcription	NHEK	skin
21	chr6:73532800-73534800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:73532800-73535200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:73533000-73534600	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links