Variant report

Variant	rs2840802
Chromosome Location	chr6:73534579-73534580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1891397	1.00[AMR][1000 genomes]
rs2796006	1.00[LWK][hapmap]
rs3005768	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73522600-73534600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:73522600-73534600	Weak transcription	NHDF-Ad	bronchial
4	chr6:73529800-73534800	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:73530600-73535200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:73530800-73534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:73531000-73534600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:73531000-73535200	Weak transcription	HSMMtube	muscle
9	chr6:73531200-73535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:73531800-73535800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:73532000-73542200	Weak transcription	HSMM	muscle
12	chr6:73532200-73534800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:73532400-73539800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:73532800-73534600	Weak transcription	NHEK	skin
15	chr6:73532800-73534800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:73532800-73535200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:73533000-73534600	Weak transcription	HMEC	breast
18	chr6:73533400-73534600	Weak transcription	Psoas Muscle	Psoas
19	chr6:73534200-73535800	Enhancers	GM12878-XiMat	blood
20	chr6:73534400-73534800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:73534400-73535200	Enhancers	Fetal Heart	heart
22	chr6:73534400-73536400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:73534400-73536600	Enhancers	Osteobl	bone
24	chr6:73534400-73537000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:73534400-73538000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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