Variant report

Variant	rs1891942
Chromosome Location	chr13:53673897-53673898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1343606	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2799338	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2799339	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2799340	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2799341	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806935	0.83[EUR][1000 genomes]
rs2806938	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806948	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806961	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2806962	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2806980	0.82[AMR][1000 genomes]
rs2806981	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4274331	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4884340	0.82[ASN][1000 genomes]
rs66582931	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7319933	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7322978	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7323451	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7327235	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985903	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7986263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9527056	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9536346	0.83[CHB][hapmap];0.81[TSI][hapmap]
rs9563131	0.80[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs9568802	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9568803	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs990780	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53672600-53674000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:53672600-53674000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:53672600-53674000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:53672600-53675600	Enhancers	Fetal Heart	heart
5	chr13:53673200-53674200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:53673200-53675400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:53673400-53674000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:53673800-53674600	Weak transcription	Duodenum Mucosa	Duodenum

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