Variant report

Variant	rs9563131
Chromosome Location	chr13:53619605-53619606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1343606	0.87[EUR][1000 genomes]
rs1891942	0.83[EUR][1000 genomes]
rs2226195	0.97[ASN][1000 genomes]
rs2799338	0.87[EUR][1000 genomes]
rs2799339	0.87[EUR][1000 genomes]
rs2799340	0.87[EUR][1000 genomes]
rs2799341	0.87[EUR][1000 genomes]
rs2806935	0.80[EUR][1000 genomes]
rs2806938	0.87[EUR][1000 genomes]
rs2806948	0.88[EUR][1000 genomes]
rs2806961	0.88[EUR][1000 genomes]
rs2806962	0.85[EUR][1000 genomes]
rs2806967	0.80[ASN][1000 genomes]
rs7319933	0.84[EUR][1000 genomes]
rs7322978	0.87[EUR][1000 genomes]
rs7323451	0.87[EUR][1000 genomes]
rs7327235	0.83[EUR][1000 genomes]
rs7986263	0.83[EUR][1000 genomes]
rs9527056	0.85[EUR][1000 genomes]
rs9536346	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9568800	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs9568802	0.84[EUR][1000 genomes]
rs9568803	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53601200-53620000	Weak transcription	Spleen	Spleen
2	chr13:53609000-53626400	Weak transcription	Small Intestine	intestine
3	chr13:53610800-53628800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:53616000-53620600	Enhancers	Fetal Muscle Leg	muscle
5	chr13:53616600-53620600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:53616800-53621400	Enhancers	Fetal Stomach	stomach
7	chr13:53617400-53619800	Weak transcription	Colon Smooth Muscle	Colon
8	chr13:53617400-53621800	Genic enhancers	Duodenum Mucosa	Duodenum
9	chr13:53617600-53619800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:53617600-53620200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr13:53617800-53620800	Enhancers	Fetal Kidney	kidney
12	chr13:53618000-53624200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:53618600-53620600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr13:53618800-53620000	Enhancers	Fetal Lung	lung
15	chr13:53619000-53620200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr13:53619000-53620200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr13:53619000-53620200	Enhancers	Rectal Smooth Muscle	rectum
18	chr13:53619200-53619800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr13:53619200-53619800	Weak transcription	Brain Germinal Matrix	brain
20	chr13:53619200-53620000	Enhancers	Brain Cingulate Gyrus	brain
21	chr13:53619200-53626600	Weak transcription	Gastric	stomach
22	chr13:53619400-53633000	Weak transcription	Pancreas	Pancrea
23	chr13:53619600-53626400	Weak transcription	Stomach Mucosa	stomach

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