Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1343600	0.89[ASN][1000 genomes]
rs1343606	0.90[ASN][1000 genomes]
rs2226195	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2799338	0.90[ASN][1000 genomes]
rs2799339	0.87[ASN][1000 genomes]
rs2799340	0.90[ASN][1000 genomes]
rs2799341	0.90[ASN][1000 genomes]
rs2799346	0.90[EUR][1000 genomes]
rs2799347	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2799348	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2806935	0.81[ASN][1000 genomes]
rs2806938	0.90[ASN][1000 genomes]
rs2806948	0.90[ASN][1000 genomes]
rs2806961	0.89[ASN][1000 genomes]
rs2806962	0.90[ASN][1000 genomes]
rs2806999	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2807004	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4884340	0.89[ASN][1000 genomes]
rs4886137	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7319933	0.83[ASN][1000 genomes]
rs7322978	0.90[ASN][1000 genomes]
rs7323451	0.90[ASN][1000 genomes]
rs9527056	0.83[ASN][1000 genomes]
rs9563131	0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[ASN][1000 genomes]
rs9568800	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9568802	0.82[ASN][1000 genomes]
rs9568803	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53625000-53638800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:53632200-53635600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53632800-53634400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:53633000-53634200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr13:53633000-53634400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr13:53633200-53635000	Weak transcription	Brain Angular Gyrus	brain
7	chr13:53633200-53636800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:53633200-53642200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:53633600-53635000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:53633600-53636400	Enhancers	Brain Hippocampus Middle	brain
11	chr13:53633600-53636600	Enhancers	Brain Substantia Nigra	brain
12	chr13:53633800-53634600	Enhancers	Pancreas	Pancrea
13	chr13:53634000-53635000	Weak transcription	Brain Germinal Matrix	brain

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