Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1343600	0.87[ASN][1000 genomes]
rs1343606	0.88[ASN][1000 genomes]
rs2226195	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2799338	0.88[ASN][1000 genomes]
rs2799339	0.85[ASN][1000 genomes]
rs2799340	0.88[ASN][1000 genomes]
rs2799341	0.88[ASN][1000 genomes]
rs2799346	0.89[EUR][1000 genomes]
rs2799347	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2799348	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2806938	0.88[ASN][1000 genomes]
rs2806948	0.88[ASN][1000 genomes]
rs2806961	0.87[ASN][1000 genomes]
rs2806962	0.88[ASN][1000 genomes]
rs2806967	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2806999	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2807004	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4884340	0.87[ASN][1000 genomes]
rs7319933	0.81[ASN][1000 genomes]
rs7322978	0.88[ASN][1000 genomes]
rs7323451	0.88[ASN][1000 genomes]
rs9527056	0.81[ASN][1000 genomes]
rs9536346	0.82[CHD][hapmap]
rs9563131	0.82[CHB][hapmap]
rs9568800	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9568802	0.80[ASN][1000 genomes]
rs9568803	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53610800-53628800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:53619400-53633000	Weak transcription	Pancreas	Pancrea
3	chr13:53625000-53638800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:53626200-53627600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:53626400-53628000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr13:53626400-53628000	Enhancers	Fetal Muscle Leg	muscle
7	chr13:53626600-53627400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:53626600-53627600	Enhancers	Brain Hippocampus Middle	brain
9	chr13:53626800-53627400	Weak transcription	Gastric	stomach
10	chr13:53626800-53628400	Enhancers	Brain Angular Gyrus	brain
11	chr13:53626800-53631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr13:53627000-53632200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:53627000-53632200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr13:53627000-53632200	Weak transcription	Fetal Stomach	stomach
15	chr13:53627200-53628800	Weak transcription	Brain Inferior Temporal Lobe	brain

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