Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1343606	0.99[ASN][1000 genomes]
rs2799338	0.99[ASN][1000 genomes]
rs2799339	0.96[ASN][1000 genomes]
rs2799340	0.99[ASN][1000 genomes]
rs2799341	0.99[ASN][1000 genomes]
rs2799347	0.81[ASN][1000 genomes]
rs2799348	0.82[ASN][1000 genomes]
rs2806935	0.92[ASN][1000 genomes]
rs2806938	0.99[ASN][1000 genomes]
rs2806948	0.99[ASN][1000 genomes]
rs2806961	0.99[ASN][1000 genomes]
rs2806962	0.99[ASN][1000 genomes]
rs2806967	0.89[ASN][1000 genomes]
rs2806999	0.81[ASN][1000 genomes]
rs2807004	0.82[ASN][1000 genomes]
rs4884340	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886137	0.87[ASN][1000 genomes]
rs7319933	0.90[ASN][1000 genomes]
rs7322978	0.99[ASN][1000 genomes]
rs7323451	0.99[ASN][1000 genomes]
rs9527056	0.90[ASN][1000 genomes]
rs9568800	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9568802	0.90[ASN][1000 genomes]
rs9568803	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53639200-53654800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:53651000-53656200	Strong transcription	Primary neutrophils fromperipheralblood	blood

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