Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1343600	0.85[ASN][1000 genomes]
rs1343606	0.86[ASN][1000 genomes]
rs2226195	0.99[EUR][1000 genomes]
rs2799338	0.86[ASN][1000 genomes]
rs2799339	0.83[ASN][1000 genomes]
rs2799340	0.86[ASN][1000 genomes]
rs2799341	0.86[ASN][1000 genomes]
rs2799346	0.89[EUR][1000 genomes]
rs2799347	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2799348	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2806938	0.86[ASN][1000 genomes]
rs2806948	0.86[ASN][1000 genomes]
rs2806961	0.85[ASN][1000 genomes]
rs2806962	0.86[ASN][1000 genomes]
rs2806967	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2806999	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2807004	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4884340	0.85[ASN][1000 genomes]
rs4886137	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322978	0.86[ASN][1000 genomes]
rs7323451	0.86[ASN][1000 genomes]
rs9563131	0.91[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53609000-53626400	Weak transcription	Small Intestine	intestine
2	chr13:53610800-53628800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:53616800-53621400	Enhancers	Fetal Stomach	stomach
4	chr13:53617400-53621800	Genic enhancers	Duodenum Mucosa	Duodenum
5	chr13:53618000-53624200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:53619200-53626600	Weak transcription	Gastric	stomach
7	chr13:53619400-53633000	Weak transcription	Pancreas	Pancrea
8	chr13:53619600-53626400	Weak transcription	Stomach Mucosa	stomach
9	chr13:53619800-53624200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:53620000-53623800	Weak transcription	Brain Germinal Matrix	brain
11	chr13:53620200-53621400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:53620200-53624200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:53620200-53626600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr13:53620800-53622800	Weak transcription	Fetal Kidney	kidney
15	chr13:53621000-53621600	Enhancers	Fetal Muscle Leg	muscle
16	chr13:53621200-53621400	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr13:53621200-53621600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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