Variant report

Variant	rs189202449
Chromosome Location	chr11:16207839-16207840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16205400-16208400	Enhancers	Liver	Liver
2	chr11:16206200-16208400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:16206400-16208000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:16206600-16212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:16206800-16208000	Enhancers	A549	lung
6	chr11:16206800-16208600	Enhancers	HepG2	liver
7	chr11:16206800-16212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:16206800-16213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:16206800-16215800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:16207000-16209400	Weak transcription	Stomach Mucosa	stomach
11	chr11:16207000-16211800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:16207200-16208200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:16207200-16208400	Weak transcription	Psoas Muscle	Psoas
14	chr11:16207200-16213000	Weak transcription	NHLF	lung
15	chr11:16207200-16215400	Weak transcription	Fetal Intestine Small	intestine
16	chr11:16207200-16221200	Weak transcription	Fetal Intestine Large	intestine
17	chr11:16207600-16208000	Enhancers	Fetal Heart	heart
18	chr11:16207800-16208200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr11:16207800-16213000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links