Variant report

Variant	rs189288499
Chromosome Location	chr11:9585106-9585107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9551354..9552960-chr11:9583061..9585366,2	MCF-7	breast:
2	chr11:9577852..9580847-chr11:9583001..9585793,2	K562	blood:
3	chr11:9568845..9571687-chr11:9584887..9588647,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv971928	chr11:9561378-9586236	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv3468619	chr11:9584484-9586097	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3468630	chr11:9584484-9586097	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9547800-9586600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr11:9550600-9586600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:9566400-9587400	Weak transcription	Psoas Muscle	Psoas
4	chr11:9573800-9586000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:9573800-9586600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:9573800-9586600	Weak transcription	Pancreas	Pancrea
7	chr11:9573800-9587800	Weak transcription	Gastric	stomach
8	chr11:9579000-9590200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr11:9582800-9586600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:9583000-9590200	Weak transcription	Primary T cells from cord blood	blood
11	chr11:9583200-9586400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:9583600-9585200	Enhancers	NHEK	skin
13	chr11:9583800-9585200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:9583800-9585200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:9583800-9585200	Enhancers	HMEC	breast
16	chr11:9584000-9586600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:9584200-9594400	Enhancers	Stomach Mucosa	stomach
18	chr11:9584200-9594400	Weak transcription	Spleen	Spleen
19	chr11:9584400-9585200	Enhancers	Esophagus	oesophagus
20	chr11:9584400-9585200	Enhancers	Fetal Heart	heart
21	chr11:9584800-9585200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:9584800-9585200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:9584800-9585200	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:9584800-9585200	Enhancers	Fetal Muscle Leg	muscle
25	chr11:9584800-9585200	Enhancers	Left Ventricle	heart
26	chr11:9584800-9585200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr11:9584800-9585200	Enhancers	HSMM	muscle
28	chr11:9584800-9586600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:9585000-9585200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:9585000-9585200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:9585000-9585200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:9585000-9585200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr11:9585000-9585200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:9585000-9585200	ZNF genes & repeats	Lung	lung
35	chr11:9585000-9585200	Enhancers	GM12878-XiMat	blood
36	chr11:9585000-9585400	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:9585000-9589600	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links