Variant report

Variant	rs189308945
Chromosome Location	chr8:120991127-120991128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120884447..120887297-chr8:120988136..120991127,2	MCF-7	breast:
2	chr8:120985045..120986649-chr8:120987660..120991345,3	MCF-7	breast:
3	chr8:120867407..120870404-chr8:120990220..120992815,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136982	Chromatin interaction
ENSG00000155792	Chromatin interaction
ENSG00000245330	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949368	chr8:120568034-121019872	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv465789	chr8:120636850-120994394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv612111	chr8:120636850-120994394	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1027974	chr8:120885478-121079658	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539739	chr8:120885478-121079658	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv968552	chr8:120988705-120994905	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv524750	chr8:120990068-120993134	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv891419	chr8:120990455-121047798	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120977800-120994600	Weak transcription	Fetal Lung	lung
2	chr8:120978000-120994800	Weak transcription	Esophagus	oesophagus
3	chr8:120978000-120994800	Weak transcription	Right Ventricle	heart
4	chr8:120978000-121013600	Weak transcription	Gastric	stomach
5	chr8:120978400-120993200	Weak transcription	Primary T cells from cord blood	blood
6	chr8:120978400-120993200	Weak transcription	Brain Anterior Caudate	brain
7	chr8:120979400-120994800	Weak transcription	Left Ventricle	heart
8	chr8:120981600-120992600	Enhancers	Fetal Intestine Large	intestine
9	chr8:120983400-120994800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:120985600-120996800	Enhancers	Stomach Mucosa	stomach
11	chr8:120986000-120994800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:120986200-120994400	Weak transcription	Right Atrium	heart
13	chr8:120986400-120999600	Weak transcription	Spleen	Spleen
14	chr8:120987400-120992200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:120987600-120991200	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr8:120987800-120992000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr8:120988400-120991200	Enhancers	Liver	Liver
18	chr8:120988400-120991400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr8:120988400-120996800	Enhancers	Fetal Intestine Small	intestine
20	chr8:120988600-120991800	Enhancers	Fetal Muscle Leg	muscle
21	chr8:120988800-120991200	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr8:120988800-120992400	Enhancers	Rectal Smooth Muscle	rectum
23	chr8:120989200-120994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:120989200-120994400	Weak transcription	Brain Substantia Nigra	brain
25	chr8:120989400-120991200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr8:120989800-120991400	Enhancers	Fetal Kidney	kidney
27	chr8:120989800-120991400	Enhancers	Small Intestine	intestine
28	chr8:120990200-120991200	Enhancers	Colonic Mucosa	Colon
29	chr8:120990200-120991200	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr8:120990200-120991400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:120990200-120991400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr8:120990200-120992400	Enhancers	Fetal Thymus	thymus
33	chr8:120990200-120992600	Enhancers	Brain Hippocampus Middle	brain
34	chr8:120990400-120991200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:120990400-120991200	Enhancers	Placenta	Placenta
36	chr8:120990400-120991200	Enhancers	Fetal Stomach	stomach
37	chr8:120990400-120991200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr8:120990400-120991400	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr8:120990400-120991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:120990400-120991400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr8:120990400-120992200	Enhancers	Psoas Muscle	Psoas
42	chr8:120990400-120992600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:120990600-120991200	Enhancers	Osteobl	bone
44	chr8:120990600-120991400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr8:120990600-120991400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:120990600-120991400	Enhancers	HSMMtube	muscle
47	chr8:120990600-120991800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr8:120990600-120992000	Enhancers	Primary hematopoietic stem cells	blood
49	chr8:120990800-120991200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:120990800-120991200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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