Variant report

Variant	rs1893232
Chromosome Location	chr18:11411311-11411312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10468677	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10502409	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11665453	0.80[CEU][hapmap]
rs11874993	0.98[ASN][1000 genomes]
rs11875572	0.96[ASN][1000 genomes]
rs12327363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12454764	0.80[CEU][hapmap]
rs12604551	0.91[ASN][1000 genomes]
rs12606899	0.88[ASN][1000 genomes]
rs12957427	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12965218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455239	0.86[ASN][1000 genomes]
rs1455240	0.84[ASN][1000 genomes]
rs16976210	0.80[CHB][hapmap];0.83[JPT][hapmap]
rs16976241	0.89[ASN][1000 genomes]
rs16976252	0.92[ASN][1000 genomes]
rs16976257	0.92[ASN][1000 genomes]
rs1893231	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2124226	0.89[JPT][hapmap]
rs2865807	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34504928	0.92[ASN][1000 genomes]
rs35650447	0.98[ASN][1000 genomes]
rs4796921	0.94[ASN][1000 genomes]
rs4797531	0.92[ASN][1000 genomes]
rs59277006	0.92[ASN][1000 genomes]
rs60157452	0.98[ASN][1000 genomes]
rs7233659	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233688	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233929	0.98[ASN][1000 genomes]
rs7234139	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7234648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7235505	0.99[ASN][1000 genomes]
rs7236196	0.98[ASN][1000 genomes]
rs7241333	0.99[ASN][1000 genomes]
rs7241439	0.99[ASN][1000 genomes]
rs7241680	1.00[ASN][1000 genomes]
rs7241771	0.99[ASN][1000 genomes]
rs7242297	0.99[ASN][1000 genomes]
rs7242962	1.00[ASN][1000 genomes]
rs7244862	0.90[ASN][1000 genomes]
rs72636736	0.83[ASN][1000 genomes]
rs72636737	0.91[ASN][1000 genomes]
rs72636738	0.92[ASN][1000 genomes]
rs72636739	0.92[ASN][1000 genomes]
rs72636740	0.91[ASN][1000 genomes]
rs72636741	0.92[ASN][1000 genomes]
rs72636742	0.92[ASN][1000 genomes]
rs72636743	0.92[ASN][1000 genomes]
rs72636746	0.96[ASN][1000 genomes]
rs72636747	0.98[ASN][1000 genomes]
rs72636748	1.00[ASN][1000 genomes]
rs72636749	1.00[ASN][1000 genomes]
rs72636750	0.99[ASN][1000 genomes]
rs72636751	0.98[ASN][1000 genomes]
rs9956090	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1056541	chr18:11336695-11558542	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv543651	chr18:11336695-11558542	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv458031	chr18:11362587-11557161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv576482	chr18:11362587-11557161	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11407400-11412400	Enhancers	NHDF-Ad	bronchial
2	chr18:11409800-11411600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr18:11410400-11413800	Enhancers	Fetal Lung	lung
4	chr18:11410800-11412200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:11411000-11411400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:11411000-11412000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr18:11411000-11412000	Weak transcription	NHLF	lung
8	chr18:11411000-11412200	Weak transcription	Fetal Stomach	stomach
9	chr18:11411000-11413000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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