Variant report

Variant	rs7234648
Chromosome Location	chr18:11412415-11412416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10468677	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10502409	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11874993	0.98[ASN][1000 genomes]
rs11875572	0.96[ASN][1000 genomes]
rs12327363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12604551	0.91[ASN][1000 genomes]
rs12606899	0.88[ASN][1000 genomes]
rs12957427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12965218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1455239	0.86[ASN][1000 genomes]
rs1455240	0.84[ASN][1000 genomes]
rs16976241	0.89[ASN][1000 genomes]
rs16976252	0.92[ASN][1000 genomes]
rs16976257	0.92[ASN][1000 genomes]
rs1893231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1893232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34504928	0.92[ASN][1000 genomes]
rs35650447	0.98[ASN][1000 genomes]
rs4796921	0.94[ASN][1000 genomes]
rs4797531	0.92[ASN][1000 genomes]
rs59277006	0.92[ASN][1000 genomes]
rs60157452	0.98[ASN][1000 genomes]
rs7233659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233929	0.98[ASN][1000 genomes]
rs7234139	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7235505	0.99[ASN][1000 genomes]
rs7236196	0.98[ASN][1000 genomes]
rs7241333	0.99[ASN][1000 genomes]
rs7241439	0.99[ASN][1000 genomes]
rs7241680	1.00[ASN][1000 genomes]
rs7241771	0.99[ASN][1000 genomes]
rs7242297	0.99[ASN][1000 genomes]
rs7242962	1.00[ASN][1000 genomes]
rs7244862	0.90[ASN][1000 genomes]
rs72636736	0.83[ASN][1000 genomes]
rs72636737	0.91[ASN][1000 genomes]
rs72636738	0.92[ASN][1000 genomes]
rs72636739	0.92[ASN][1000 genomes]
rs72636740	0.91[ASN][1000 genomes]
rs72636741	0.92[ASN][1000 genomes]
rs72636742	0.92[ASN][1000 genomes]
rs72636743	0.92[ASN][1000 genomes]
rs72636746	0.96[ASN][1000 genomes]
rs72636747	0.98[ASN][1000 genomes]
rs72636748	1.00[ASN][1000 genomes]
rs72636749	1.00[ASN][1000 genomes]
rs72636750	0.99[ASN][1000 genomes]
rs72636751	0.98[ASN][1000 genomes]
rs9956090	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458029	chr18:10814334-11662151	Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv576480	chr18:10814334-11662151	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1057976	chr18:11251898-11664914	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
5	nsv543650	chr18:11251898-11664914	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
6	nsv833589	chr18:11293101-11454521	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1056541	chr18:11336695-11558542	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv543651	chr18:11336695-11558542	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv458031	chr18:11362587-11557161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv576482	chr18:11362587-11557161	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11410400-11413800	Enhancers	Fetal Lung	lung
2	chr18:11411000-11413000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr18:11411600-11412600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:11411600-11413800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr18:11411800-11412600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:11412000-11412800	Weak transcription	Brain Germinal Matrix	brain
7	chr18:11412000-11413000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr18:11412000-11413800	Enhancers	NHLF	lung
9	chr18:11412200-11413200	Enhancers	Fetal Stomach	stomach
10	chr18:11412200-11413400	Enhancers	Fetal Muscle Trunk	muscle
11	chr18:11412200-11414000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr18:11412200-11414400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:11412400-11412600	Enhancers	HSMM	muscle
14	chr18:11412400-11412600	Flanking Active TSS	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links