Variant report
| Variant | rs1893247 |
|---|---|
| Chromosome Location | chr18:30415062-30415063 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:6)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AC012123.1.1-1 | chr18:30414819-30415154 | ENSG00000263765.1 |
| 2 | lnc-AC012123.1.1-1 | chr18:30414952-30415154 | ENSG00000263765.1 |
| 3 | lnc-AC012123.1.1-1 | chr18:30414819-30415154 | NONHSAT058870 |
| 4 | lnc-AC012123.1.1-1 | chr18:30414823-30415154 | NONHSAT058872 |
| 5 | lnc-AC012123.1.1-1 | chr18:30414819-30415154 | NONHSAT058871 |
| 6 | lnc-AC012123.1.1-1 | chr18:30414819-30415154 | ENSG00000263765.1 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs10853423 | 1.00[GIH][hapmap] |
| rs1893246 | 1.00[GIH][hapmap] |
| rs1941282 | 1.00[GIH][hapmap] |
| rs1941283 | 1.00[GIH][hapmap] |
| rs2186967 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758474 | chr18:30383327-30574737 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2758720 | chr18:30383327-30574737 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv32785 | chr18:30413359-30471471 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
