Variant report

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC012123.1.1-1	chr18:30414819-30415154	ENSG00000263765.1
2	lnc-AC012123.1.1-1	chr18:30414952-30415154	ENSG00000263765.1
3	lnc-AC012123.1.1-1	chr18:30414819-30415154	NONHSAT058870
4	lnc-AC012123.1.1-1	chr18:30414823-30415154	NONHSAT058872
5	lnc-AC012123.1.1-1	chr18:30414819-30415154	NONHSAT058871
6	lnc-AC012123.1.1-1	chr18:30414819-30415154	ENSG00000263765.1

No data

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10853423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs12954449	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16963902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1893247	1.00[GIH][hapmap]
rs1941254	1.00[JPT][hapmap]
rs1941281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1941282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1941283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap]
rs1941286	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941287	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714776	1.00[CEU][hapmap]
rs7228308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097557	1.00[JPT][hapmap]
rs8098125	1.00[JPT][hapmap]
rs948368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952405	1.00[JPT][hapmap]
rs9962968	1.00[JPT][hapmap]
rs9966484	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1893246	SCGB2A2	trans	brain	seeQTL
rs1893246	PIP4K2B	trans	brain	seeQTL
rs1893246	SCGB1D2	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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