Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10853423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12954449	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16963902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1893246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941254	1.00[JPT][hapmap]
rs1941281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs1941282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1941283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs1941287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155785	0.87[AMR][1000 genomes]
rs6506993	0.87[AMR][1000 genomes]
rs6650651	0.87[AMR][1000 genomes]
rs6650652	0.87[AMR][1000 genomes]
rs6650653	0.87[AMR][1000 genomes]
rs714776	1.00[CEU][hapmap]
rs7228308	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8097557	1.00[JPT][hapmap]
rs8098125	1.00[JPT][hapmap]
rs948368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948373	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9952405	1.00[JPT][hapmap]
rs9962968	1.00[JPT][hapmap]
rs9966484	1.00[JPT][hapmap]
rs9989606	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30420400-30421600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr18:30420400-30421600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr18:30420600-30421000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:30420600-30421800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:30420800-30421200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:30420800-30421200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:30420800-30421400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:30420800-30421600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr18:30420800-30421600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr18:30420800-30421600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: