Variant report

Variant	rs1941254
Chromosome Location	chr18:30473369-30473370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10853423	1.00[JPT][hapmap]
rs12457058	0.83[AMR][1000 genomes]
rs12954449	1.00[JPT][hapmap]
rs16963902	1.00[JPT][hapmap]
rs1893246	1.00[JPT][hapmap]
rs1941262	0.83[AMR][1000 genomes]
rs1941271	0.88[AMR][1000 genomes]
rs1941281	1.00[JPT][hapmap]
rs1941282	1.00[JPT][hapmap]
rs1941283	1.00[JPT][hapmap]
rs4411577	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4799675	0.94[AMR][1000 genomes]
rs8097557	1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8098125	1.00[JPT][hapmap]
rs948368	1.00[JPT][hapmap]
rs9950067	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9952405	1.00[JPT][hapmap];0.82[AFR][1000 genomes]
rs9962968	1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs9966484	1.00[JPT][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30469800-30475200	Weak transcription	Pancreas	Pancrea
2	chr18:30470600-30473600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:30472200-30473800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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