Variant report

Variant	rs1893325
Chromosome Location	chr18:13189895-13189896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13178200..13180241-chr18:13187540..13190155,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10164063	1.00[EUR][1000 genomes]
rs11080631	1.00[EUR][1000 genomes]
rs1613375	1.00[EUR][1000 genomes]
rs1628961	1.00[EUR][1000 genomes]
rs1786993	1.00[EUR][1000 genomes]
rs1893324	1.00[EUR][1000 genomes]
rs1945136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2027693	1.00[EUR][1000 genomes]
rs2027694	1.00[EUR][1000 genomes]
rs2155864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187011	0.90[AFR][1000 genomes]
rs4239310	1.00[EUR][1000 genomes]
rs478502	1.00[EUR][1000 genomes]
rs4796970	1.00[EUR][1000 genomes]
rs4797734	0.88[AFR][1000 genomes]
rs482642	1.00[EUR][1000 genomes]
rs483647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs486976	1.00[EUR][1000 genomes]
rs506877	1.00[EUR][1000 genomes]
rs533010	1.00[EUR][1000 genomes]
rs543201	1.00[EUR][1000 genomes]
rs547479	1.00[EUR][1000 genomes]
rs569831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs575250	1.00[EUR][1000 genomes]
rs7238800	1.00[EUR][1000 genomes]
rs73419545	1.00[EUR][1000 genomes]
rs9945456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv909409	chr18:13151544-13240284	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13184600-13192800	Weak transcription	Right Atrium	heart
2	chr18:13186400-13190800	Weak transcription	Adipose Nuclei	Adipose
3	chr18:13186800-13191800	Weak transcription	Right Ventricle	heart
4	chr18:13187000-13191200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:13187200-13190600	Weak transcription	Fetal Heart	heart
6	chr18:13187800-13191400	Weak transcription	Liver	Liver
7	chr18:13188000-13191200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:13189000-13191000	Weak transcription	HepG2	liver

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