Variant report

Variant	rs1945136
Chromosome Location	chr18:13213140-13213141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13205622..13207285-chr18:13211632..13213351,2	MCF-7	breast:
2	chr18:13213063..13222276-chr18:13535546..13547582,47	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10164063	1.00[EUR][1000 genomes]
rs11080631	1.00[EUR][1000 genomes]
rs1557328	0.92[AFR][1000 genomes]
rs1613375	1.00[EUR][1000 genomes]
rs1628961	1.00[EUR][1000 genomes]
rs1786993	1.00[EUR][1000 genomes]
rs1893324	1.00[EUR][1000 genomes]
rs1893325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2027693	1.00[EUR][1000 genomes]
rs2027694	1.00[EUR][1000 genomes]
rs2155864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4239310	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs478502	1.00[EUR][1000 genomes]
rs4796970	1.00[EUR][1000 genomes]
rs482642	1.00[EUR][1000 genomes]
rs483647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs486976	1.00[EUR][1000 genomes]
rs506877	1.00[EUR][1000 genomes]
rs533010	1.00[EUR][1000 genomes]
rs543201	1.00[EUR][1000 genomes]
rs547479	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs569831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs575250	1.00[EUR][1000 genomes]
rs7238800	1.00[EUR][1000 genomes]
rs7244281	1.00[MEX][hapmap]
rs73419545	1.00[EUR][1000 genomes]
rs8086324	0.87[AFR][1000 genomes]
rs9945456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9964950	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv909409	chr18:13151544-13240284	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv828183	chr18:13211474-13222376	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13206800-13216800	Weak transcription	Right Atrium	heart
2	chr18:13207600-13216400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr18:13208600-13213400	Weak transcription	Thymus	Thymus
4	chr18:13212000-13216000	Weak transcription	Fetal Brain Male	brain
5	chr18:13212200-13213600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr18:13212200-13215800	Weak transcription	Fetal Brain Female	brain
7	chr18:13212600-13215400	Enhancers	Fetal Thymus	thymus
8	chr18:13212800-13213400	Bivalent Enhancer	HepG2	liver

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