Variant report

Variant	rs189424161
Chromosome Location	chr6:31864395-31864396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr6:31864200-31864531	K562	blood:	n/a	n/a
2	MXI1	chr6:31863739-31866744	SK-N-SH	brain:	n/a	n/a
3	POLR2A	chr6:31864092-31864795	HepG2	liver:	n/a	n/a
4	ELF1	chr6:31863965-31864590	GM12878	blood:	n/a	chr6:31864044-31864057
5	MAZ	chr6:31864117-31866788	IMR90	lung:	n/a	chr6:31865500-31865509 chr6:31865146-31865162
6	POLR2A	chr6:31864317-31871123	SK-N-MC	brain:	n/a	n/a

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31864040..31872511-chr6:31917614..31930102,27	MCF-7	breast:
2	chr6:31856075..31861147-chr6:31862978..31867521,9	K562	blood:
3	chr6:31859669..31862692-chr6:31863697..31866493,6	MCF-7	breast:
4	chr6:31863236..31865768-chr6:31937517..31940391,2	K562	blood:
5	chr6:31629180..31631831-chr6:31863567..31866267,3	K562	blood:
6	chr6:31851566..31853842-chr6:31864020..31866737,2	MCF-7	breast:
7	chr6:31800669..31805219-chr6:31862460..31868046,11	K562	blood:
8	chr6:31864115..31868338-chr6:31917147..31921993,5	K562	blood:
9	chr6:31670378..31672824-chr6:31863319..31865557,3	K562	blood:
10	chr6:31863494..31865862-chr6:32150158..32153094,2	K562	blood:
11	chr6:31793170..31796834-chr6:31863715..31868848,6	K562	blood:
12	chr6:31863902..31865476-chr6:32142561..32145148,2	K562	blood:
13	chr6:31618325..31621676-chr6:31863690..31867276,5	K562	blood:
14	chr6:31864133..31871768-chr6:31886295..31891953,13	MCF-7	breast:
15	chr6:31798354..31804916-chr6:31860790..31871982,18	MCF-7	breast:
16	chr6:31627970..31635325-chr6:31864036..31871429,12	K562	blood:
17	chr6:31828023..31833065-chr6:31863439..31869544,9	K562	blood:
18	chr6:31861403..31866645-chr6:31932025..31935945,5	MCF-7	breast:
19	chr6:31829731..31832430-chr6:31863949..31866099,3	K562	blood:
20	chr6:31836840..31843251-chr6:31862592..31868285,8	MCF-7	breast:
21	chr6:31836750..31839391-chr6:31864326..31866210,2	K562	blood:
22	chr6:31862589..31864971-chr6:31865421..31867201,2	MCF-7	breast:
23	chr6:31758020..31763887-chr6:31863868..31868391,6	K562	blood:
24	chr6:31850468..31854025-chr6:31863862..31867993,5	MCF-7	breast:
25	chr6:31830083..31833987-chr6:31862759..31865610,4	MCF-7	breast:
26	chr6:31862879..31872535-chr6:31911667..31928766,47	MCF-7	breast:
27	chr6:31801734..31803566-chr6:31863143..31864724,2	MCF-7	breast:
28	chr6:31863628..31867852-chr6:31937946..31941812,10	MCF-7	breast:
29	chr6:31864068..31872693-chr6:31934470..31941847,12	MCF-7	breast:
30	chr6:31843997..31846007-chr6:31863630..31865953,2	K562	blood:
31	chr6:31800867..31807275-chr6:31862460..31868132,16	K562	blood:
32	chr6:31795475..31798260-chr6:31864062..31867064,3	K562	blood:

No data

Variant related genes	Relation type
EHMT2	TF binding region
C2	TF binding region
ENSG00000204438	Chromatin interaction
ENSG00000204388	Chromatin interaction
ENSG00000243649	Chromatin interaction
ENSG00000221267	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000201823	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000204387	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000204371	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000166278	Chromatin interaction
ENSG00000204305	Chromatin interaction
ENSG00000204356	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204310	Chromatin interaction
ENSG00000237080	Chromatin interaction
ENSG00000204351	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204427	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000201754	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
2	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
3	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
5	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
7	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
9	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
10	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	esv3428142	chr6:31615800-31881809	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	257 gene(s)	inside rSNPs	diseases
12	nsv884428	chr6:31728102-31870326	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
13	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
14	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
15	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
16	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
17	nsv884472	chr6:31813898-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
18	nsv508399	chr6:31829474-31902423	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
19	nsv884474	chr6:31836055-31870326	Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
20	nsv462875	chr6:31838441-31907147	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv601960	chr6:31838441-31907147	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	nsv884475	chr6:31840625-31880320	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
23	nsv884476	chr6:31848000-31870326	Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
24	nsv884477	chr6:31850724-31870326	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
25	nsv884478	chr6:31850724-31874505	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
26	nsv884479	chr6:31850724-31878433	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
27	nsv884480	chr6:31851234-31870856	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
28	nsv884481	chr6:31851234-31878433	Strong transcription Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
29	nsv884482	chr6:31851234-31880320	Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
30	nsv966619	chr6:31852653-31870444	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
31	nsv884483	chr6:31852692-31868075	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	42 gene(s)	inside rSNPs	diseases
32	nsv884484	chr6:31854543-31879158	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	50 gene(s)	inside rSNPs	diseases
33	nsv884485	chr6:31860576-31880320	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
34	nsv884486	chr6:31861207-31869135	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	46 gene(s)	inside rSNPs	diseases
35	nsv884487	chr6:31861207-31870326	Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
36	nsv884488	chr6:31861207-31870856	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
37	nsv884489	chr6:31861207-31870856	Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
38	nsv884490	chr6:31861207-31871485	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
39	nsv884491	chr6:31861207-31872551	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
40	nsv884492	chr6:31861207-31874505	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
41	nsv884493	chr6:31861207-31876647	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
42	nsv884494	chr6:31861207-31876647	Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
43	nsv884495	chr6:31861207-31878433	Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
44	nsv884496	chr6:31861207-31878495	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
45	nsv884497	chr6:31861207-31879158	Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
46	nsv884498	chr6:31861207-31880320	Flanking Active TSS Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	49 gene(s)	inside rSNPs	diseases
47	esv3392811	chr6:31864198-31866746	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	37 gene(s)	inside rSNPs	diseases
48	nsv884499	chr6:31864304-31872551	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
49	nsv884500	chr6:31864304-31873465	Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases
50	nsv884501	chr6:31864304-31874505	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31847400-31864400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:31847400-31864400	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:31847800-31864400	Strong transcription	Fetal Intestine Large	intestine
4	chr6:31847800-31864400	Strong transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:31851600-31864400	Weak transcription	Psoas Muscle	Psoas
6	chr6:31855400-31864400	Weak transcription	Stomach Mucosa	stomach
7	chr6:31856200-31864600	Weak transcription	Small Intestine	intestine
8	chr6:31856400-31864600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:31857800-31864400	Weak transcription	HSMMtube	muscle
10	chr6:31859400-31864400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:31860800-31864400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:31860800-31864400	Weak transcription	Colonic Mucosa	Colon
13	chr6:31860800-31864600	Weak transcription	Aorta	Aorta
14	chr6:31861200-31864400	Weak transcription	Gastric	stomach
15	chr6:31861200-31864400	Weak transcription	HUVEC	blood vessel
16	chr6:31861200-31864400	Weak transcription	NHEK	skin
17	chr6:31861400-31864400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:31861400-31864400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:31861400-31864400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:31861400-31864400	Weak transcription	Right Ventricle	heart
21	chr6:31861400-31864400	Weak transcription	NHDF-Ad	bronchial
22	chr6:31861600-31864400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:31861600-31864400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:31861600-31864600	Weak transcription	Ovary	ovary
25	chr6:31862800-31864400	Strong transcription	Fetal Lung	lung
26	chr6:31863200-31864400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:31863200-31864400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:31863200-31864400	Weak transcription	NH-A	brain
29	chr6:31863400-31864600	Weak transcription	Left Ventricle	heart
30	chr6:31863600-31864400	Transcr. at gene 5' and 3'	Brain Germinal Matrix	brain
31	chr6:31863800-31864400	Genic enhancers	Primary T cells from cord blood	blood
32	chr6:31863800-31864400	Weak transcription	Fetal Kidney	kidney
33	chr6:31863800-31864400	Genic enhancers	NHLF	lung
34	chr6:31863800-31864600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:31863800-31864600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
36	chr6:31863800-31864600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:31863800-31864600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:31863800-31864600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
39	chr6:31863800-31864600	Enhancers	Fetal Brain Male	brain
40	chr6:31863800-31864600	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
41	chr6:31863800-31864600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
42	chr6:31864000-31864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:31864000-31864400	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:31864000-31864400	Enhancers	Primary T cells fromperipheralblood	blood
45	chr6:31864000-31864400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr6:31864000-31864400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr6:31864000-31864400	Enhancers	Brain Anterior Caudate	brain
48	chr6:31864000-31864400	Genic enhancers	Brain Substantia Nigra	brain
49	chr6:31864000-31864400	Enhancers	Duodenum Mucosa	Duodenum
50	chr6:31864000-31864400	Enhancers	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links