Variant report

Variant	rs189460844
Chromosome Location	chr6:149067993-149067994
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF2	chr6:149067849-149068138	H1-hESC	embryonic stem cell:	n/a	chr6:149067973-149067989
2	POLR2A	chr6:149067951-149068223	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF2	chr6:149067665-149068154	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr6:149067900-149068084	GM12878	blood:	n/a	n/a
5	ZNF384	chr6:149067714-149068223	K562	blood:	n/a	n/a
6	USF1	chr6:149067849-149068067	K562	blood:	n/a	chr6:149067973-149067989
7	CTCF	chr6:149067673-149068157	IMR90	lung:	n/a	n/a
8	ZNF143	chr6:149067394-149068258	H1-hESC	embryonic stem cell:	n/a	n/a
9	RUNX3	chr6:149067667-149068070	GM12878	blood:	n/a	n/a
10	TFAP2A	chr6:149067084-149069514	Hela-S3	cervix:	n/a	chr6:149069048-149069056 chr6:149069442-149069453 chr6:149069442-149069453 chr6:149069048-149069056 chr6:149069243-149069251 chr6:149069442-149069453 chr6:149069048-149069056 chr6:149069442-149069453 chr6:149069243-149069251 chr6:149069242-149069253 chr6:149069443-149069451 chr6:149069243-149069251
11	POLR2A	chr6:149067974-149068374	Hela-S3	cervix:	n/a	n/a
12	USF2	chr6:149067909-149068148	Hela-S3	cervix:	n/a	chr6:149067973-149067989
13	FOXP2	chr6:149067797-149068442	PFSK-1	brain:	n/a	n/a
14	POLR2A	chr6:149067818-149068456	GM12891	blood:	n/a	n/a
15	FOXM1	chr6:149067500-149068221	GM12878	blood:	n/a	n/a
16	RAD21	chr6:149067512-149069188	IMR90	lung:	n/a	chr6:149067977-149067987 chr6:149068450-149068462 chr6:149067833-149067842
17	MYC	chr6:149067756-149068593	MCF10A-Er-Src	breast:	n/a	chr6:149068437-149068447
18	ZMIZ1	chr6:149067983-149068018	K562	blood:	n/a	n/a
19	JUN	chr6:149067614-149068104	H1-hESC	embryonic stem cell:	n/a	n/a
20	KAP1	chr6:149067241-149068203	HEK293	kidney:	n/a	chr6:149068166-149068174
21	SIN3AK20	chr6:149067748-149068226	PFSK-1	brain:	n/a	n/a
22	ZNF143	chr6:149067685-149068369	GM12878	blood:	n/a	n/a
23	STAT3	chr6:149067729-149068036	MCF10A-Er-Src	breast:	n/a	n/a
24	YY1	chr6:149067882-149068178	HCT-116	colon:	n/a	chr6:149067972-149067981
25	MAZ	chr6:149067408-149069284	Hela-S3	cervix:	n/a	chr6:149069010-149069020 chr6:149068437-149068447
26	UBTF	chr6:149067659-149068168	K562	blood:	n/a	n/a
27	POLR2A	chr6:149067983-149068274	Hela-S3	cervix:	n/a	n/a
28	ELF1	chr6:149067362-149069363	GM12878	blood:	n/a	chr6:149069033-149069042 chr6:149068379-149068388
29	NFIC	chr6:149067757-149068186	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:149067802-149068780	Hela-S3	cervix:	n/a	n/a
31	USF1	chr6:149067816-149068190	H1-hESC	embryonic stem cell:	n/a	chr6:149067973-149067989
32	BHLHE40	chr6:149067719-149068210	GM12878	blood:	n/a	chr6:149067973-149067989
33	MXI1	chr6:149067543-149068181	GM12878	blood:	n/a	n/a
34	RUNX3	chr6:149067624-149068089	GM12878	blood:	n/a	n/a
35	ELK1	chr6:149067802-149068120	GM12878	blood:	n/a	n/a
36	CHD1	chr6:149067955-149068223	H1-hESC	embryonic stem cell:	n/a	chr6:149067964-149067974
37	FOXA2	chr6:149067571-149068111	A549	lung:	n/a	n/a
38	FOXP2	chr6:149067779-149068241	PFSK-1	brain:	n/a	n/a
39	POLR2A	chr6:149067862-149068408	GM12878	blood:	n/a	n/a
40	POLR2A	chr6:149067477-149068413	HEK293	kidney:	n/a	n/a
41	POLR2A	chr6:149067945-149068267	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr6:149067957-149068193	GM12878	blood:	n/a	n/a
43	FOXA1	chr6:149067663-149068029	HepG2	liver:	n/a	n/a
44	TAF1	chr6:149067686-149068351	H1-hESC	embryonic stem cell:	n/a	n/a
45	FOXM1	chr6:149067607-149068086	GM12878	blood:	n/a	n/a
46	POLR2A	chr6:149067339-149068737	H1-hESC	embryonic stem cell:	n/a	n/a
47	RFX5	chr6:149067562-149068580	Hela-S3	cervix:	n/a	chr6:149068416-149068425
48	EP300	chr6:149067750-149068024	GM12878	blood:	n/a	n/a
49	FOXA2	chr6:149067578-149068097	A549	lung:	n/a	n/a
50	POLR2A	chr6:149067614-149068280	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:148899084..148899814-chr6:149067515..149068142,2	MCF-7	breast:
2	chr6:149067550..149069400-chr6:149273636..149276626,2	MCF-7	breast:
3	chr6:149067355..149068145-chr6:149268892..149269692,5	MCF-7	breast:

Variant related genes	Relation type
UST	TF binding region
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407924	chr6:149067684-149070232	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149067000-149068600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:149067000-149069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr6:149067000-149069600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr6:149067000-149069800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr6:149067000-149070200	Active TSS	NHDF-Ad	bronchial
6	chr6:149067000-149070400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr6:149067200-149068400	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr6:149067200-149068600	Active TSS	Right Ventricle	heart
9	chr6:149067200-149068800	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr6:149067200-149068800	Active TSS	Placenta Amnion	Placenta Amnion
11	chr6:149067200-149069200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:149067200-149069200	Bivalent/Poised TSS	A549	lung
13	chr6:149067200-149069600	Bivalent/Poised TSS	Fetal Brain Female	brain
14	chr6:149067200-149069600	Active TSS	Left Ventricle	heart
15	chr6:149067200-149069800	Active TSS	Aorta	Aorta
16	chr6:149067200-149070000	Active TSS	Fetal Kidney	kidney
17	chr6:149067200-149070000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
18	chr6:149067200-149070000	Active TSS	Right Atrium	heart
19	chr6:149067200-149070200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr6:149067200-149070200	Active TSS	HSMMtube	muscle
21	chr6:149067200-149070600	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:149067400-149068000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr6:149067400-149069000	Active TSS	Psoas Muscle	Psoas
24	chr6:149067400-149069200	Active TSS	H1 Cell Line	embryonic stem cell
25	chr6:149067400-149069400	Active TSS	Primary T cells from cord blood	blood
26	chr6:149067400-149069600	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr6:149067400-149070000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:149067400-149070000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:149067400-149070000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:149067400-149070000	Active TSS	Brain Substantia Nigra	brain
31	chr6:149067400-149070000	Active TSS	Ovary	ovary
32	chr6:149067400-149070200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:149067400-149070200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:149067400-149070200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:149067400-149070600	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:149067600-149068000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
37	chr6:149067600-149068200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
38	chr6:149067600-149068400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:149067600-149068400	Active TSS	Fetal Muscle Leg	muscle
40	chr6:149067600-149068600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:149067600-149068600	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:149067600-149068600	Active TSS	Lung	lung
43	chr6:149067600-149068600	Active TSS	Pancreas	Pancrea
44	chr6:149067600-149068600	Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr6:149067600-149068800	Active TSS	Gastric	stomach
46	chr6:149067600-149068800	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:149067600-149068800	Active TSS	K562	blood
48	chr6:149067600-149069000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:149067600-149069000	Active TSS	Stomach Smooth Muscle	stomach
50	chr6:149067600-149069000	Active TSS	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links