Variant report

Variant	esv3407924
Chromosome Location	chr6:149067684-149070232
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:693)
CpG islands
(count:915)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:693 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr6:149067625-149068252	GM12878	blood:	n/a	n/a
2	ATF2	chr6:149067665-149068154	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr6:149067791-149068270	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr6:149068955-149068975	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr6:149069702-149069946	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr6:149069219-149069419	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCLAF1	chr6:149067615-149068208	GM12878	blood:	n/a	chr6:149067974-149067983
8	BHLHE40	chr6:149068531-149068618	GM12878	blood:	n/a	n/a
9	BHLHE40	chr6:149067719-149068210	GM12878	blood:	n/a	chr6:149067973-149067989
10	BHLHE40	chr6:149068935-149069133	GM12878	blood:	n/a	n/a
11	BHLHE40	chr6:149067878-149068149	K562	blood:	n/a	chr6:149067973-149067989
12	BHLHE40	chr6:149068124-149068135	HepG2	liver:	n/a	n/a
13	BRCA1	chr6:149068786-149068846	H1-hESC	embryonic stem cell:	n/a	n/a
14	BRCA1	chr6:149067685-149068153	Hela-S3	cervix:	n/a	n/a
15	CEBPB	chr6:149068964-149069234	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr6:149067799-149068177	Hela-S3	cervix:	n/a	n/a
17	CEBPB	chr6:149067894-149068145	H1-hESC	embryonic stem cell:	n/a	n/a
18	CHD1	chr6:149068097-149068139	GM12878	blood:	n/a	n/a
19	CHD1	chr6:149069247-149069258	H1-hESC	embryonic stem cell:	n/a	n/a
20	CHD1	chr6:149067955-149068223	H1-hESC	embryonic stem cell:	n/a	chr6:149067964-149067974
21	CHD1	chr6:149070073-149070093	H1-hESC	embryonic stem cell:	n/a	n/a
22	CHD1	chr6:149069003-149069156	GM12878	blood:	n/a	n/a
23	CHD1	chr6:149068713-149068838	H1-hESC	embryonic stem cell:	n/a	n/a
24	CHD1	chr6:149067714-149067878	GM12878	blood:	n/a	n/a
25	CHD2	chr6:149067493-149068218	H1-hESC	embryonic stem cell:	n/a	chr6:149067964-149067974
26	CHD2	chr6:149068819-149069195	GM12878	blood:	n/a	chr6:149069167-149069177
27	CHD2	chr6:149067388-149069239	Hela-S3	cervix:	n/a	chr6:149069167-149069177 chr6:149068434-149068444 chr6:149067964-149067974
28	CHD2	chr6:149068446-149069084	H1-hESC	embryonic stem cell:	n/a	n/a
29	CHD2	chr6:149067707-149068533	GM12878	blood:	n/a	chr6:149068434-149068444 chr6:149067964-149067974
30	CTBP2	chr6:149067493-149070040	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr6:149069660-149069810	AG09309	skin:	n/a	n/a
32	CTCF	chr6:149067760-149067910	GM12871	blood:	n/a	n/a
33	CTCF	chr6:149068580-149068730	HAc	cerebellar:	n/a	n/a
34	CTCF	chr6:149067748-149067942	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr6:149067757-149067969	A549	lung:	n/a	n/a
36	CTCF	chr6:149068526-149068728	ProgFib	skin:	n/a	n/a
37	CTCF	chr6:149067760-149067910	WERI-Rb-1	eye:	n/a	n/a
38	CTCF	chr6:149069716-149069854	GM10266	blood:	n/a	n/a
39	CTCF	chr6:149069020-149069170	GM12865	blood:	n/a	n/a
40	CTCF	chr6:149067762-149067949	NHEK	skin:	n/a	n/a
41	CTCF	chr6:149069720-149069870	HPF	lung:	n/a	chr6:149069848-149069861
42	CTCF	chr6:149069760-149069910	HPF	lung:	n/a	chr6:149069848-149069861
43	CTCF	chr6:149067680-149067830	MCF-7	breast:	n/a	n/a
44	CTCF	chr6:149067840-149067990	RPTEC	kidney:	n/a	n/a
45	CTCF	chr6:149067760-149067910	HBMEC	blood vessel:	n/a	n/a
46	CTCF	chr6:149069780-149069930	BJ	skin:	n/a	chr6:149069848-149069861
47	CTCF	chr6:149068038-149068085	LNCaP	prostate:	n/a	n/a
48	CTCF	chr6:149067667-149067930	K562	blood:	n/a	n/a
49	CTCF	chr6:149068880-149069030	BJ	skin:	n/a	n/a
50	CTCF	chr6:149067840-149067990	GM12873	blood:	n/a	n/a

(count:915 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:149068864-149068914	PrEC	prostate:	n/a
2	chr6:149068974-149069024	NHDF-neo	bronchial:	n/a
3	chr6:149068864-149068914	BE2_C	brain:	n/a
4	chr6:149067742-149067792	PrEC	prostate:	n/a
5	chr6:149068180-149068230	GM19239	blood:	n/a
6	chr6:149068180-149068230	SK-N-MC	brain:	n/a
7	chr6:149067661-149067711	HPAEpiC	pulmonary alveolar:	n/a
8	chr6:149068556-149068606	PANC-1	pancreas:	n/a
9	chr6:149068439-149068489	GM12878	blood:	n/a
10	chr6:149067875-149067925	AG09319	gingival:	n/a
11	chr6:149067742-149067792	HAEpiC	amniotic membrane:	n/a
12	chr6:149068556-149068606	U87	brain:	n/a
13	chr6:149068387-149068437	AG10803	skin:	n/a
14	chr6:149068180-149068230	HNPCEpiC	eye:	n/a
15	chr6:149068974-149069024	Hela-S3	cervix:	n/a
16	chr6:149067742-149067792	LNCaP	prostate:	n/a
17	chr6:149068387-149068437	HCM	heart:	n/a
18	chr6:149068180-149068230	HCF	heart:	n/a
19	chr6:149067742-149067792	Hela-S3	cervix:	n/a
20	chr6:149068439-149068489	A549	lung:	n/a
21	chr6:149068387-149068437	T-47D	breast:	n/a
22	chr6:149067875-149067925	PANC-1	pancreas:	n/a
23	chr6:149068864-149068914	HCF	heart:	n/a
24	chr6:149068864-149068914	NH-A	brain:	n/a
25	chr6:149068439-149068489	HCT-116	colon:	n/a
26	chr6:149068387-149068437	HCF	heart:	n/a
27	chr6:149069452-149069502	H1-hESC	embryonic stem cell:	embryo
28	chr6:149067661-149067711	K562	blood:	n/a
29	chr6:149067875-149067925	HCM	heart:	n/a
30	chr6:149067661-149067711	HCF	heart:	n/a
31	chr6:149068158-149068208	NH-A	brain:	n/a
32	chr6:149067875-149067925	Hela-S3	cervix:	n/a
33	chr6:149068974-149069024	PFSK-1	brain:	n/a
34	chr6:149069774-149069824	GM06990	blood:	n/a
35	chr6:149068974-149069024	HNPCEpiC	eye:	n/a
36	chr6:149068384-149068434	HL-60	blood:	n/a
37	chr6:149068384-149068434	RPTEC	kidney:	n/a
38	chr6:149068180-149068230	HRCEpiC	kidney:	n/a
39	chr6:149068387-149068437	HEK293	kidney:	embryo
40	chr6:149068864-149068914	BJ	skin:	n/a
41	chr6:149067742-149067792	HRE	kidney:	n/a
42	chr6:149069774-149069824	AoSMC	blood vessel:	n/a
43	chr6:149069824-149069874	RPTEC	kidney:	n/a
44	chr6:149068864-149068914	GM12878	blood:	n/a
45	chr6:149068216-149068266	SAEC	small airway:	n/a
46	chr6:149068387-149068437	K562	blood:	n/a
47	chr6:149068439-149068489	IMR90	lung:	fetal
48	chr6:149067875-149067925	Caco-2	colon:	n/a
49	chr6:149068180-149068230	BE2_C	brain:	n/a
50	chr6:149067742-149067792	CMK	blood:	n/a

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149069327..149069921-chr6:149269105..149269693,3	MCF-7	breast:
2	chr6:149067550..149069400-chr6:149273636..149276626,2	MCF-7	breast:
3	chr6:149069061..149070772-chr6:149269797..149271380,2	MCF-7	breast:
4	chr6:148899084..148899814-chr6:149067515..149068142,2	MCF-7	breast:
5	chr6:149068817..149070537-chr6:149071420..149073807,2	MCF-7	breast:
6	chr6:149067355..149068145-chr6:149268892..149269692,5	MCF-7	breast:
7	chr6:149067411..149067919-chr6:149268731..149269686,2	K562	blood:
8	chr6:149019649..149022015-chr6:149065928..149067925,2	MCF-7	breast:

No data

Variant related genes	Relation type
UST	TF binding region
UST	CpG island
ENSG00000111962	chromatin interactions

Extended variants
information (count: 99 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs544003338	chr6:149067740-149067741	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs563767951	chr6:149067747-149067748	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs561652827	chr6:149067913-149067914	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs545029722	chr6:149067914-149067915	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs375526615	chr6:149067922-149067923	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs184536809	chr6:149067974-149067975	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs189460844	chr6:149067993-149067994	Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs566160829	chr6:149068027-149068028	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs181219935	chr6:149068034-149068035	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs374019265	chr6:149068053-149068054	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs567556861	chr6:149068070-149068071	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs536118643	chr6:149068112-149068113	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs547664588	chr6:149068159-149068160	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs569799200	chr6:149068229-149068230	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs538424920	chr6:149068295-149068296	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs7450766	chr6:149068311-149068312	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs571780182	chr6:149068328-149068329	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs540628596	chr6:149068352-149068353	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs554226376	chr6:149068356-149068357	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs574364725	chr6:149068374-149068375	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs543806227	chr6:149068390-149068391	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs529591200	chr6:149068391-149068392	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs563983449	chr6:149068474-149068475	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs184117487	chr6:149068500-149068501	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs113254492	chr6:149068526-149068527	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs199870664	chr6:149068576-149068577	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs370896083	chr6:149068597-149068598	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs559911654	chr6:149068615-149068616	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs9498146	chr6:149068627-149068628	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs188909023	chr6:149068645-149068646	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs561981107	chr6:149068671-149068672	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs370525461	chr6:149068690-149068691	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs202057866	chr6:149068711-149068712	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs138003460	chr6:149068727-149068728	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs374662380	chr6:149068774-149068775	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs45490997	chr6:149068778-149068779	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs148792963	chr6:149068780-149068781	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs368482150	chr6:149068790-149068791	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs200783884	chr6:149068801-149068802	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs373916080	chr6:149068816-149068817	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs372426275	chr6:149068846-149068847	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs565445110	chr6:149068856-149068857	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs534451382	chr6:149068918-149068919	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs554644269	chr6:149068962-149068963	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs574373870	chr6:149068975-149068976	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs537033291	chr6:149068991-149068992	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs557383082	chr6:149069003-149069004	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs577587226	chr6:149069011-149069012	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs546425289	chr6:149069040-149069041	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs192345222	chr6:149069057-149069058	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Autism	22495311	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Malignant melanoma	17260012	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Soft tissue tumor	16732325	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelofibrosis	22110671	CNVD
Esophageal cancer	21851588	CNVD
Cancer	17160897	CNVD
Breast cancer	17417639	CNVD
Breast cancer	17850661	CNVD
Renal cell carcinoma	18765545	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD

Chromatin state (count:424 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149067000-149067800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:149067000-149067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149067000-149067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:149067000-149067800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:149067000-149067800	Flanking Active TSS	Dnd41	blood
6	chr6:149067000-149068600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:149067000-149069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:149067000-149069600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:149067000-149069800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr6:149067000-149070200	Active TSS	NHDF-Ad	bronchial
11	chr6:149067000-149070400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr6:149067200-149067800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:149067200-149067800	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr6:149067200-149067800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:149067200-149067800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:149067200-149067800	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr6:149067200-149067800	Flanking Bivalent TSS/Enh	Liver	Liver
18	chr6:149067200-149067800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr6:149067200-149067800	Flanking Active TSS	Placenta	Placenta
20	chr6:149067200-149067800	Flanking Active TSS	NH-A	brain
21	chr6:149067200-149067800	Flanking Active TSS	NHEK	skin
22	chr6:149067200-149068400	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr6:149067200-149068600	Active TSS	Right Ventricle	heart
24	chr6:149067200-149068800	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:149067200-149068800	Active TSS	Placenta Amnion	Placenta Amnion
26	chr6:149067200-149069200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:149067200-149069200	Bivalent/Poised TSS	A549	lung
28	chr6:149067200-149069600	Bivalent/Poised TSS	Fetal Brain Female	brain
29	chr6:149067200-149069600	Active TSS	Left Ventricle	heart
30	chr6:149067200-149069800	Active TSS	Aorta	Aorta
31	chr6:149067200-149070000	Active TSS	Fetal Kidney	kidney
32	chr6:149067200-149070000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:149067200-149070000	Active TSS	Right Atrium	heart
34	chr6:149067200-149070200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr6:149067200-149070200	Active TSS	HSMMtube	muscle
36	chr6:149067200-149070600	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:149067400-149067800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:149067400-149067800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
39	chr6:149067400-149067800	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
41	chr6:149067400-149067800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
43	chr6:149067400-149067800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:149067400-149067800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
45	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
46	chr6:149067400-149067800	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
48	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
49	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
50	chr6:149067400-149067800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links