Variant report

Variant	rs557383082
Chromosome Location	chr6:149069003-149069004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149068817..149070537-chr6:149071420..149073807,2	MCF-7	breast:
2	chr6:149067550..149069400-chr6:149273636..149276626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407924	chr6:149067684-149070232	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149067000-149069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr6:149067000-149069600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:149067000-149069800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:149067000-149070200	Active TSS	NHDF-Ad	bronchial
5	chr6:149067000-149070400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:149067200-149069200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:149067200-149069200	Bivalent/Poised TSS	A549	lung
8	chr6:149067200-149069600	Bivalent/Poised TSS	Fetal Brain Female	brain
9	chr6:149067200-149069600	Active TSS	Left Ventricle	heart
10	chr6:149067200-149069800	Active TSS	Aorta	Aorta
11	chr6:149067200-149070000	Active TSS	Fetal Kidney	kidney
12	chr6:149067200-149070000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
13	chr6:149067200-149070000	Active TSS	Right Atrium	heart
14	chr6:149067200-149070200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr6:149067200-149070200	Active TSS	HSMMtube	muscle
16	chr6:149067200-149070600	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:149067400-149069200	Active TSS	H1 Cell Line	embryonic stem cell
18	chr6:149067400-149069400	Active TSS	Primary T cells from cord blood	blood
19	chr6:149067400-149069600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:149067400-149070000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:149067400-149070000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:149067400-149070000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:149067400-149070000	Active TSS	Brain Substantia Nigra	brain
24	chr6:149067400-149070000	Active TSS	Ovary	ovary
25	chr6:149067400-149070200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:149067400-149070200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:149067400-149070200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:149067400-149070600	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr6:149067600-149069200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:149067600-149069200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:149067600-149069200	Active TSS	Fetal Heart	heart
32	chr6:149067600-149069200	Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr6:149067600-149069400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:149067600-149069400	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr6:149067600-149069400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:149067600-149069600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:149067600-149069600	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr6:149067600-149069600	Active TSS	Fetal Lung	lung
39	chr6:149067600-149069600	Active TSS	Stomach Mucosa	stomach
40	chr6:149067600-149069600	Active TSS	HSMM	muscle
41	chr6:149067600-149069600	Active TSS	NHLF	lung
42	chr6:149067600-149069800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:149067600-149069800	Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:149067600-149069800	Bivalent/Poised TSS	Fetal Stomach	stomach
45	chr6:149067600-149069800	Active TSS	Osteobl	bone
46	chr6:149067600-149070000	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr6:149067600-149070000	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr6:149067600-149070000	Active TSS	Esophagus	oesophagus
49	chr6:149067600-149070000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
50	chr6:149067600-149070000	Active TSS	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links