Variant report

Variant	rs9498146
Chromosome Location	chr6:149068627-149068628
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149067550..149069400-chr6:149273636..149276626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111962	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73600851	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485327	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498144	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498148	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885797	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3407924	chr6:149067684-149070232	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149067000-149069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
2	chr6:149067000-149069600	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:149067000-149069800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:149067000-149070200	Active TSS	NHDF-Ad	bronchial
5	chr6:149067000-149070400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:149067200-149068800	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:149067200-149068800	Active TSS	Placenta Amnion	Placenta Amnion
8	chr6:149067200-149069200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:149067200-149069200	Bivalent/Poised TSS	A549	lung
10	chr6:149067200-149069600	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr6:149067200-149069600	Active TSS	Left Ventricle	heart
12	chr6:149067200-149069800	Active TSS	Aorta	Aorta
13	chr6:149067200-149070000	Active TSS	Fetal Kidney	kidney
14	chr6:149067200-149070000	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
15	chr6:149067200-149070000	Active TSS	Right Atrium	heart
16	chr6:149067200-149070200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:149067200-149070200	Active TSS	HSMMtube	muscle
18	chr6:149067200-149070600	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr6:149067400-149069000	Active TSS	Psoas Muscle	Psoas
20	chr6:149067400-149069200	Active TSS	H1 Cell Line	embryonic stem cell
21	chr6:149067400-149069400	Active TSS	Primary T cells from cord blood	blood
22	chr6:149067400-149069600	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr6:149067400-149070000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:149067400-149070000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:149067400-149070000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:149067400-149070000	Active TSS	Brain Substantia Nigra	brain
27	chr6:149067400-149070000	Active TSS	Ovary	ovary
28	chr6:149067400-149070200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:149067400-149070200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:149067400-149070200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:149067400-149070600	Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr6:149067600-149068800	Active TSS	Gastric	stomach
33	chr6:149067600-149068800	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr6:149067600-149068800	Active TSS	K562	blood
35	chr6:149067600-149069000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:149067600-149069000	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:149067600-149069000	Active TSS	Thymus	Thymus
38	chr6:149067600-149069000	Active TSS	GM12878-XiMat	blood
39	chr6:149067600-149069200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:149067600-149069200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:149067600-149069200	Active TSS	Fetal Heart	heart
42	chr6:149067600-149069200	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr6:149067600-149069400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr6:149067600-149069400	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr6:149067600-149069400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:149067600-149069600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:149067600-149069600	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:149067600-149069600	Active TSS	Fetal Lung	lung
49	chr6:149067600-149069600	Active TSS	Stomach Mucosa	stomach
50	chr6:149067600-149069600	Active TSS	HSMM	muscle

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