Variant report

Variant	rs73600851
Chromosome Location	chr6:149067372-149067373
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:149067074-149067420	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:149067341-149067698	GM12891	blood:	n/a	n/a
3	TFAP2A	chr6:149067084-149069514	Hela-S3	cervix:	n/a	chr6:149069048-149069056 chr6:149069442-149069453 chr6:149069442-149069453 chr6:149069048-149069056 chr6:149069243-149069251 chr6:149069442-149069453 chr6:149069048-149069056 chr6:149069442-149069453 chr6:149069243-149069251 chr6:149069242-149069253 chr6:149069443-149069451 chr6:149069243-149069251
4	JUND	chr6:149067131-149067508	H1-hESC	embryonic stem cell:	n/a	n/a
5	KAP1	chr6:149067241-149068203	HEK293	kidney:	n/a	chr6:149068166-149068174
6	ELF1	chr6:149067362-149069363	GM12878	blood:	n/a	chr6:149069033-149069042 chr6:149068379-149068388
7	POLR2A	chr6:149067339-149068737	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr6:149067231-149069320	MCF10A-Er-Src	breast:	n/a	n/a
9	RAD21	chr6:149067287-149068247	H1-hESC	embryonic stem cell:	n/a	chr6:149067977-149067987 chr6:149067833-149067842
10	FOS	chr6:149067020-149067426	MCF10A-Er-Src	breast:	n/a	n/a
11	SMC3	chr6:149067284-149068207	Hela-S3	cervix:	n/a	chr6:149067977-149067987 chr6:149067868-149067875
12	FOS	chr6:149067071-149067422	MCF10A-Er-Src	breast:	n/a	n/a
13	NR3C1	chr6:149067346-149067703	A549	lung:	n/a	chr6:149067573-149067599 chr6:149067579-149067586 chr6:149067573-149067599 chr6:149067578-149067594 chr6:149067578-149067594 chr6:149067579-149067593 chr6:149067573-149067599 chr6:149067578-149067594 chr6:149067573-149067599 chr6:149067577-149067595 chr6:149067573-149067599
14	ZNF263	chr6:149067359-149068444	HEK293-T-REx	kidney:	n/a	chr6:149068112-149068133
15	TFAP2C	chr6:149067055-149069498	Hela-S3	cervix:	n/a	chr6:149069045-149069060
16	POLR2A	chr6:149067021-149067612	GM12891	blood:	n/a	n/a
17	RAD21	chr6:149067236-149068213	HCT-116	colon:	n/a	chr6:149067977-149067987 chr6:149067833-149067842
18	MAX	chr6:149067164-149069378	Hela-S3	cervix:	n/a	chr6:149069010-149069020 chr6:149068437-149068447
19	TCF7L2	chr6:149067272-149068211	Hela-S3	cervix:	n/a	n/a
20	MAZ	chr6:149067138-149070205	IMR90	lung:	n/a	chr6:149069010-149069020 chr6:149068437-149068447
21	KAP1	chr6:149067055-149068115	U2OS	brain:	n/a	n/a
22	ZNF143	chr6:149067191-149068133	Hela-S3	cervix:	n/a	n/a
23	FOS	chr6:149067073-149067431	MCF10A-Er-Src	breast:	n/a	n/a
24	CTCF	chr6:149067280-149067430	HAc	cerebellar:	n/a	n/a
25	E2F4	chr6:149067106-149067475	MCF10A-Er-Src	breast:	n/a	n/a
26	MYC	chr6:149067194-149067394	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149067355..149068145-chr6:149268892..149269692,5	MCF-7	breast:
2	chr6:149019649..149022015-chr6:149065928..149067925,2	MCF-7	breast:

Variant related genes	Relation type
UST	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs9485327	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498146	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498148	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885797	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149065000-149067400	Weak transcription	Gastric	stomach
2	chr6:149065200-149067400	Weak transcription	Ovary	ovary
3	chr6:149067000-149067400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:149067000-149067400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:149067000-149067400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:149067000-149067400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr6:149067000-149067400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:149067000-149067400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:149067000-149067400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:149067000-149067400	Enhancers	Brain Substantia Nigra	brain
11	chr6:149067000-149067400	Enhancers	Fetal Heart	heart
12	chr6:149067000-149067400	Bivalent Enhancer	Fetal Intestine Small	intestine
13	chr6:149067000-149067400	Bivalent Enhancer	Fetal Thymus	thymus
14	chr6:149067000-149067400	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
15	chr6:149067000-149067400	Enhancers	Stomach Mucosa	stomach
16	chr6:149067000-149067400	Enhancers	HMEC	breast
17	chr6:149067000-149067600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:149067000-149067600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:149067000-149067600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:149067000-149067600	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr6:149067000-149067600	Flanking Active TSS	Rectal Smooth Muscle	rectum
22	chr6:149067000-149067800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:149067000-149067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:149067000-149067800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:149067000-149067800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:149067000-149067800	Flanking Active TSS	Dnd41	blood
27	chr6:149067000-149068600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:149067000-149069600	Active TSS	iPS-18 Cell Line	embryonic stem cell
29	chr6:149067000-149069600	Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr6:149067000-149069800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr6:149067000-149070200	Active TSS	NHDF-Ad	bronchial
32	chr6:149067000-149070400	Active TSS	H9 Cell Line	embryonic stem cell
33	chr6:149067200-149067400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:149067200-149067400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:149067200-149067400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:149067200-149067400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:149067200-149067400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:149067200-149067400	Enhancers	Primary B cells from peripheral blood	blood
39	chr6:149067200-149067400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
40	chr6:149067200-149067400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
41	chr6:149067200-149067400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:149067200-149067400	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr6:149067200-149067400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:149067200-149067400	Bivalent Enhancer	Brain Germinal Matrix	brain
45	chr6:149067200-149067400	Enhancers	Brain Hippocampus Middle	brain
46	chr6:149067200-149067400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:149067200-149067400	Bivalent/Poised TSS	Colonic Mucosa	Colon
48	chr6:149067200-149067400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
49	chr6:149067200-149067400	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr6:149067200-149067400	Flanking Active TSS	Fetal Stomach	stomach

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