Variant report

Variant	rs1894817
Chromosome Location	chr12:9029686-9029687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16917867	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16917872	1.00[EUR][1000 genomes]
rs1894818	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55776445	0.96[EUR][1000 genomes]
rs56206826	0.94[EUR][1000 genomes]
rs59933620	0.90[EUR][1000 genomes]
rs61749073	0.96[EUR][1000 genomes]
rs7136954	0.96[EUR][1000 genomes]
rs7137682	0.96[EUR][1000 genomes]
rs7311897	0.83[GIH][hapmap];0.85[TSI][hapmap];0.96[EUR][1000 genomes]
rs73234371	0.96[EUR][1000 genomes]
rs73234380	0.96[EUR][1000 genomes]
rs73236241	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049949	chr12:9008609-9049198	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8987600-9040000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:8996000-9040000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:9011800-9029800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9013800-9033800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:9022400-9030400	Weak transcription	Esophagus	oesophagus
6	chr12:9023000-9039000	Weak transcription	Brain Substantia Nigra	brain
7	chr12:9024000-9040000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:9029400-9030000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:9029400-9030200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:9029600-9029800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr12:9029600-9029800	Enhancers	K562	blood
12	chr12:9029600-9030200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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