Variant report

Variant	rs1897327
Chromosome Location	chr2:38966307-38966308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:38966114..38968421-chr2:39005419..39007550,2	MCF-7	breast:
2	chr2:38957599..38960532-chr2:38963906..38966818,3	MCF-7	breast:
3	chr2:38821957..38830238-chr2:38965333..38974515,17	K562	blood:
4	chr2:38601784..38603879-chr2:38964621..38966916,2	K562	blood:
5	chr2:38816516..38836019-chr2:38963690..38980163,62	K562	blood:
6	chr2:38761989..38764024-chr2:38963798..38966475,2	K562	blood:

Variant related genes	Relation type
ENSG00000271443	Chromatin interaction
ENSG00000143889	Chromatin interaction
ENSG00000119787	Chromatin interaction
ENSG00000235586	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10168028	1.00[ASN][1000 genomes]
rs10196452	1.00[YRI][hapmap]
rs10200935	1.00[ASN][1000 genomes]
rs10203173	1.00[ASN][1000 genomes]
rs13390845	1.00[ASN][1000 genomes]
rs13393938	1.00[ASN][1000 genomes]
rs13412656	1.00[ASN][1000 genomes]
rs13418902	1.00[ASN][1000 genomes]
rs13419028	1.00[ASN][1000 genomes]
rs13425948	1.00[ASN][1000 genomes]
rs1541877	0.87[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023076	1.00[ASN][1000 genomes]
rs1971104	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3099969	1.00[ASN][1000 genomes]
rs3112180	0.88[EUR][1000 genomes]
rs3112187	1.00[ASN][1000 genomes]
rs3112190	1.00[ASN][1000 genomes]
rs6753616	1.00[ASN][1000 genomes]
rs6754741	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6760965	1.00[ASN][1000 genomes]
rs72797353	1.00[ASN][1000 genomes]
rs72797362	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	esv1797820	chr2:38941956-38972456	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv820974	chr2:38945458-38972971	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv1814150	chr2:38948483-38972456	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv1795154	chr2:38951608-38971432	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
7	esv1800732	chr2:38951608-38973837	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
8	esv1791751	chr2:38953669-38968842	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	esv2763640	chr2:38954419-38977371	Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv581486	chr2:38955129-38971745	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv819664	chr2:38955537-38972936	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
12	esv1796087	chr2:38955665-38969042	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	esv1796733	chr2:38955665-38969042	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
14	esv1807919	chr2:38955665-38969042	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
15	esv1809603	chr2:38955665-38969042	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
16	esv1817201	chr2:38955665-38969042	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
17	esv1818810	chr2:38955665-38969042	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
18	esv1833004	chr2:38955665-38969042	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
19	esv1833314	chr2:38955665-38969042	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
20	esv1843703	chr2:38955665-38969042	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
21	esv1845006	chr2:38955665-38969042	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
22	nsv828997	chr2:38955665-38972971	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
23	esv1834061	chr2:38955862-38972281	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
24	esv1839313	chr2:38955862-38972281	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
25	nsv441752	chr2:38955862-38972281	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
26	esv1792928	chr2:38955865-38968842	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
27	esv1812013	chr2:38955865-38968842	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
28	esv1812402	chr2:38955865-38968842	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
29	esv1819373	chr2:38955865-38968842	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
30	esv1819586	chr2:38955865-38968842	Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
31	esv1830555	chr2:38955865-38968842	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
32	esv1832327	chr2:38955865-38968842	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
33	esv1844402	chr2:38955865-38968842	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
34	esv1848077	chr2:38955865-38968842	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
35	esv1820680	chr2:38955865-38973046	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
36	esv1831489	chr2:38955865-38973046	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
37	esv1798055	chr2:38955865-39039504	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
38	esv1835023	chr2:38955866-38972281	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
39	esv2421335	chr2:38955866-38972281	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
40	esv20771	chr2:38955877-38972830	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
41	nsv581488	chr2:38955977-38970130	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
42	nsv581489	chr2:38955977-38970979	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
43	nsv581490	chr2:38955977-38973814	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
44	esv1834132	chr2:38955977-38977612	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	43 gene(s)	inside rSNPs	diseases
45	esv1836070	chr2:38955977-38977612	Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	43 gene(s)	inside rSNPs	diseases
46	esv1820267	chr2:38956758-38972456	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
47	esv1849677	chr2:38956758-38972456	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
48	esv1838056	chr2:38956947-38970130	Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
49	nsv581491	chr2:38960491-38971745	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
50	nsv581492	chr2:38960927-38971745	Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38928800-38971600	Weak transcription	Small Intestine	intestine
2	chr2:38936400-38968400	Weak transcription	Colonic Mucosa	Colon
3	chr2:38937600-38970400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:38948200-38968200	Weak transcription	Stomach Mucosa	stomach
5	chr2:38948400-38970600	Weak transcription	NHEK	skin
6	chr2:38948600-38970200	Weak transcription	NHDF-Ad	bronchial
7	chr2:38948600-38971200	Weak transcription	Fetal Kidney	kidney
8	chr2:38950200-38970400	Weak transcription	Right Atrium	heart
9	chr2:38950400-38970400	Weak transcription	Psoas Muscle	Psoas
10	chr2:38950400-38973600	Weak transcription	Fetal Brain Male	brain
11	chr2:38950800-38969600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr2:38950800-38972200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:38951000-38970600	Weak transcription	Fetal Heart	heart
14	chr2:38956600-38974200	Strong transcription	Fetal Thymus	thymus
15	chr2:38957000-38966600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:38957200-38966400	Weak transcription	GM12878-XiMat	blood
17	chr2:38957400-38969800	Weak transcription	NHLF	lung
18	chr2:38958400-38966600	Strong transcription	A549	lung
19	chr2:38958400-38971600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:38958600-38968800	Weak transcription	NH-A	brain
21	chr2:38960600-38971600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:38961000-38972200	Weak transcription	Esophagus	oesophagus
23	chr2:38961200-38966800	Weak transcription	Fetal Lung	lung
24	chr2:38961200-38967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr2:38961200-38967600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr2:38961200-38968400	Weak transcription	Left Ventricle	heart
27	chr2:38961200-38968600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr2:38961200-38968600	Weak transcription	Ovary	ovary
29	chr2:38961200-38970000	Weak transcription	Hela-S3	cervix
30	chr2:38961800-38968800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:38962000-38968200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr2:38962600-38968000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr2:38962600-38969800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr2:38962600-38970000	Weak transcription	HSMMtube	muscle
35	chr2:38962600-38971200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr2:38963200-38971600	Strong transcription	Dnd41	blood
37	chr2:38963400-38971200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr2:38963800-38966400	Strong transcription	Fetal Intestine Small	intestine
39	chr2:38964200-38967000	Strong transcription	Fetal Stomach	stomach
40	chr2:38964400-38966400	Strong transcription	Thymus	Thymus
41	chr2:38964400-38966600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:38964400-38967000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:38964400-38967000	Strong transcription	Brain Germinal Matrix	brain
44	chr2:38964400-38967000	Strong transcription	Fetal Intestine Large	intestine
45	chr2:38964400-38967200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr2:38964400-38967200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr2:38964400-38967400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr2:38964400-38974000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr2:38964600-38966400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:38964600-38966400	Strong transcription	Fetal Muscle Trunk	muscle

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