Variant report

Variant	rs1897524
Chromosome Location	chr5:127135252-127135253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10463833	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12513840	1.00[EUR][1000 genomes]
rs12520720	0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12522308	1.00[EUR][1000 genomes]
rs12523504	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1515641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966643	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35890477	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4836331	1.00[EUR][1000 genomes]
rs4836333	1.00[EUR][1000 genomes]
rs57808867	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73345063	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7706845	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7714051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722425	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7729470	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9688160	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127128200-127137400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:127130000-127136600	Weak transcription	Gastric	stomach
3	chr5:127131800-127136600	Weak transcription	Stomach Mucosa	stomach
4	chr5:127134200-127136000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:127134600-127135600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:127134600-127136000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:127134800-127135800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:127134800-127136000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:127135000-127135400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:127135000-127135400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:127135000-127135400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:127135000-127135600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:127135000-127137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:127135200-127135400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:127135200-127135600	Enhancers	NHEK	skin
16	chr5:127135200-127143800	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links