Variant report
| Variant | rs7722425 |
|---|---|
| Chromosome Location | chr5:127125762-127125763 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10463500 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs10463830 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs10463831 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs10463833 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12513840 | 1.00[EUR][1000 genomes] |
| rs12520720 | 0.92[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12522308 | 1.00[EUR][1000 genomes] |
| rs12523504 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1515641 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17696654 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs17696932 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17764290 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs1897524 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1966643 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2280170 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
| rs35890477 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4836331 | 1.00[EUR][1000 genomes] |
| rs4836333 | 1.00[EUR][1000 genomes] |
| rs57808867 | 0.96[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6877039 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs73345063 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7706845 | 1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7707416 | 1.00[CHB][hapmap];0.81[JPT][hapmap] |
| rs7714051 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7729470 | 0.96[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9686108 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs9688160 | 1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033607 | chr5:126385181-127304459 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv1021483 | chr5:126927834-127304873 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv965610 | chr5:127122488-127132347 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
Variant related diseases (count:1)
| Disease | PMID | Source |
|---|---|---|
| Attention deficit hyperactivity disorder (hyperactivity-impulsivity symptoms) | 23527680 | GWAS catalog |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:127125200-127125800 | ZNF genes & repeats | Aorta | Aorta |
| 2 | chr5:127125400-127125800 | Enhancers | Stomach Mucosa | stomach |
