Variant report

Variant	rs1898263
Chromosome Location	chr3:143689858-143689859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr3:143689675-143691051	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr3:143689636-143692179	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr3:143689448-143692708	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr3:143689718-143692074	HEK293	kidney:	n/a	n/a
5	REST	chr3:143689428-143691555	H1-neurons	neurons:	n/a	chr3:143689885-143689905 chr3:143689912-143689925
6	TCF7L2	chr3:143689631-143692487	HCT-116	colon:	n/a	n/a
7	MAX	chr3:143689475-143692453	A549	lung:	n/a	chr3:143689817-143689826 chr3:143689829-143689838 chr3:143689513-143689522
8	POLR2A	chr3:143689516-143692415	HL-60	blood:	n/a	n/a
9	MAX	chr3:143689667-143692276	ECC-1	luminal epithelium:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
10	ATF2	chr3:143689546-143689945	GM12878	blood:	n/a	n/a
11	MYC	chr3:143689557-143692334	K562	blood:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
12	FOXM1	chr3:143689578-143692479	GM12878	blood:	n/a	n/a
13	POLR2A	chr3:143689635-143692573	GM12878	blood:	n/a	n/a
14	CTCF	chr3:143689740-143689890	AG04450	lung:	n/a	n/a
15	CTCF	chr3:143689780-143689930	GM12873	blood:	n/a	n/a
16	MAX	chr3:143689459-143692886	Hela-S3	cervix:	n/a	chr3:143689817-143689826 chr3:143689829-143689838 chr3:143689513-143689522
17	POLR2A	chr3:143689651-143692557	GM18526	blood:	n/a	n/a
18	MYC	chr3:143689633-143692296	K562	blood:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
19	MAX	chr3:143689528-143692416	HCT-116	colon:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
20	CTCF	chr3:143689842-143690495	K562	blood:	n/a	n/a
21	POLR2A	chr3:143689670-143692495	GM15510	blood:	n/a	n/a
22	POLR2A	chr3:143689852-143691849	GM12878	blood:	n/a	n/a
23	MXI1	chr3:143689654-143692425	GM12878	blood:	n/a	chr3:143689823-143689838 chr3:143689811-143689826
24	MAX	chr3:143689675-143691869	A549	lung:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
25	RUNX3	chr3:143689706-143692538	GM12878	blood:	n/a	chr3:143690436-143690445 chr3:143690436-143690445 chr3:143690482-143690497
26	CREB1	chr3:143689619-143691129	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr3:143689673-143690038	GM12878	blood:	n/a	n/a
28	MXI1	chr3:143689589-143692923	Hela-S3	cervix:	n/a	chr3:143689823-143689838 chr3:143689811-143689826 chr3:143689595-143689604
29	MYC	chr3:143689554-143692333	NB4	blood:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
30	CTCF	chr3:143689740-143689890	HMEC	breast:	n/a	n/a
31	SIN3AK20	chr3:143689603-143691944	MCF-7	breast:	n/a	n/a
32	EBF1	chr3:143689546-143691654	GM12878	blood:	n/a	n/a
33	HA-E2F1	chr3:143689572-143692533	MCF-7	breast:	n/a	chr3:143690620-143690629 chr3:143690586-143690595 chr3:143690818-143690827 chr3:143690784-143690794 chr3:143691005-143691017
34	CTCF	chr3:143689760-143690030	GM12874	blood:	n/a	n/a
35	ATF2	chr3:143689642-143689972	H1-hESC	embryonic stem cell:	n/a	n/a
36	ELF1	chr3:143689654-143692414	GM12878	blood:	n/a	chr3:143691041-143691053 chr3:143690785-143690797
37	CTCF	chr3:143689820-143689970	GM12864	blood:	n/a	n/a
38	POLR2A	chr3:143689856-143692006	Gliobla	brain:	n/a	n/a
39	CTCF	chr3:143689760-143689910	GM12865	blood:	n/a	n/a
40	CTCF	chr3:143689760-143689910	AG04449	skin:	n/a	n/a
41	MYC	chr3:143689581-143692797	K562	blood:	n/a	chr3:143689817-143689826 chr3:143689829-143689838
42	POLR2A	chr3:143689567-143692266	NB4	blood:	n/a	n/a
43	ZNF263	chr3:143689537-143692886	HEK293-T-REx	kidney:	n/a	chr3:143690863-143690884 chr3:143690386-143690395
44	PML	chr3:143689523-143692462	GM12878	blood:	n/a	chr3:143689898-143689906
45	E2F6	chr3:143689668-143692237	K562	blood:	n/a	chr3:143690620-143690629 chr3:143690586-143690595 chr3:143690818-143690827 chr3:143690784-143690794 chr3:143691005-143691017
46	ELK1	chr3:143689556-143690953	GM12878	blood:	n/a	n/a
47	POLR2A	chr3:143689532-143692596	Raji	blood:	n/a	n/a
48	POLR2A	chr3:143689663-143692547	K562	blood:	n/a	n/a
49	POLR2A	chr3:143689444-143691646	MCF10A-Er-Src	breast:	n/a	n/a
50	POLR2A	chr3:143689585-143691926	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:143689810-143689860	HMEC	breast:	n/a
2	chr3:143689810-143689860	BE2_C	brain:	n/a
3	chr3:143689810-143689860	HUVEC	blood vessel:	n/a
4	chr3:143689810-143689860	NB4	blood:	n/a
5	chr3:143689810-143689860	GM12891	blood:	n/a
6	chr3:143689810-143689860	HL-60	blood:	n/a
7	chr3:143689810-143689860	AG09309	skin:	n/a
8	chr3:143689810-143689860	HRE	kidney:	n/a
9	chr3:143689810-143689860	HCPEpiC	choroid plexus:	n/a
10	chr3:143689810-143689860	Caco-2	colon:	n/a
11	chr3:143689810-143689860	SK-N-MC	brain:	n/a
12	chr3:143689810-143689860	NHBE	bronchial:	n/a
13	chr3:143689810-143689860	AG09319	gingival:	n/a
14	chr3:143689810-143689860	BJ	skin:	n/a
15	chr3:143689810-143689860	AG10803	skin:	n/a
16	chr3:143689810-143689860	HepG2	liver:	n/a
17	chr3:143689810-143689860	Hepatocyte	liver:	n/a
18	chr3:143689810-143689860	ProgFib	skin:	n/a
19	chr3:143689810-143689860	K562	blood:	n/a
20	chr3:143689810-143689860	GM12892	blood:	n/a
21	chr3:143689810-143689860	SAEC	small airway:	n/a
22	chr3:143689810-143689860	MCF-7	breast:	n/a
23	chr3:143689810-143689860	Hela-S3	cervix:	n/a
24	chr3:143689810-143689860	AoSMC	blood vessel:	n/a
25	chr3:143689810-143689860	AG04449	skin:	fetal
26	chr3:143689810-143689860	PANC-1	pancreas:	n/a
27	chr3:143689810-143689860	HAEpiC	amniotic membrane:	n/a
28	chr3:143689810-143689860	T-47D	breast:	n/a
29	chr3:143689810-143689860	H1-hESC	embryonic stem cell:	embryo
30	chr3:143689810-143689860	AG04450	lung:	fetal
31	chr3:143689810-143689860	HIPEpiC	eye:	n/a
32	chr3:143689810-143689860	IMR90	lung:	fetal
33	chr3:143689810-143689860	HCF	heart:	n/a
34	chr3:143689810-143689860	SK-N-SH	brain:	n/a
35	chr3:143689810-143689860	LNCaP	prostate:	n/a
36	chr3:143689810-143689860	SK-N-SH_RA	brain:	n/a
37	chr3:143689810-143689860	NT2-D1	testis:	n/a
38	chr3:143689810-143689860	U87	brain:	n/a
39	chr3:143689810-143689860	HRPEpiC	eye:	n/a
40	chr3:143689810-143689860	HNPCEpiC	eye:	n/a
41	chr3:143689810-143689860	ECC-1	luminal epithelium:	n/a
42	chr3:143689810-143689860	NH-A	brain:	n/a
43	chr3:143689810-143689860	SKMC	muscle:	n/a
44	chr3:143689810-143689860	ovcar-3	ovarian:	n/a
45	chr3:143689810-143689860	HPAEpiC	pulmonary alveolar:	n/a
46	chr3:143689810-143689860	HEEpiC	esophagus:	n/a
47	chr3:143689810-143689860	HEK293	kidney:	embryo
48	chr3:143689810-143689860	RPTEC	kidney:	n/a
49	chr3:143689810-143689860	GM19239	blood:	n/a
50	chr3:143689810-143689860	HCM	heart:	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:19418740..19420583-chr3:143689830..143691587,2	MCF-7	breast:
2	chr3:143689763..143690371-chr7:23510326..23510860,2	Hela-S3	cervix:
3	chr12:12956339..12957122-chr3:143689535..143690489,2	Hela-S3	cervix:
4	chr3:143688929..143690453-chr9:116724811..116727064,2	MCF-7	breast:
5	chr17:57914617..57916585-chr3:143689584..143691332,2	MCF-7	breast:
6	chr3:143689777..143690496-chr6:26055384..26056279,2	Hela-S3	cervix:

Variant related genes	Relation type
C3orf58	TF binding region
C3orf58	CpG island
ENSG00000062716	Chromatin interaction
ENSG00000100084	Chromatin interaction
ENSG00000185608	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs1027726	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1027727	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1125704	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1125705	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710441	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11720540	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11914522	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13062780	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13083596	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13092757	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13323371	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1354495	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1370027	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370028	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1370029	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1370030	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1394399	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1394400	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1394401	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1436629	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1469871	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1504596	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1504601	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1550141	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1550142	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1583550	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595208	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1595209	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1595210	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1595211	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17603166	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1992094	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118071	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2118072	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2134914	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2134915	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2134916	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164551	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2164552	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2164553	0.81[EUR][1000 genomes]
rs2202378	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2217926	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221411	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2361211	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2370174	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2370175	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34200306	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs34743418	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35291263	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4258964	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4258965	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4276180	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4334641	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4350918	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4431106	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4437138	0.86[AMR][1000 genomes]
rs4462961	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4476500	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4549268	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4563410	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4575896	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4582058	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59870355	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440206	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6440207	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440208	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6440209	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67417607	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6766439	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6767811	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6770317	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6798775	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6803148	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723490	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs723492	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7432451	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7611555	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7611648	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7611814	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619036	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7619220	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7622357	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7626898	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7628282	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7630146	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7631704	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638577	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7643341	0.81[ASN][1000 genomes]
rs7643800	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7650233	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650239	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650332	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650459	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7651567	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7652490	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653287	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7653431	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289671	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9683376	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9811736	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9811888	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9812340	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9812374	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9829883	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9835170	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840157	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9840519	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9840971	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9841182	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9854844	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9860872	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865128	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9867025	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9867615	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9867976	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9869178	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9870551	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9872448	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9872595	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876654	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9878070	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv518814	chr3:143666825-143703750	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
5	esv3349108	chr3:143676303-143692796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143688800-143696400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:143689000-143693200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:143689000-143694400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr3:143689000-143695400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:143689000-143696800	Active TSS	Stomach Smooth Muscle	stomach
6	chr3:143689200-143690000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:143689200-143693200	Active TSS	A549	lung
8	chr3:143689200-143693400	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr3:143689200-143693800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:143689200-143694400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr3:143689200-143695400	Active TSS	K562	blood
12	chr3:143689200-143695800	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr3:143689200-143696200	Active TSS	GM12878-XiMat	blood
14	chr3:143689400-143690000	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr3:143689400-143690000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
16	chr3:143689400-143690000	Flanking Active TSS	HMEC	breast
17	chr3:143689400-143690200	Flanking Active TSS	Dnd41	blood
18	chr3:143689400-143690600	Active TSS	Brain Germinal Matrix	brain
19	chr3:143689400-143691000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:143689400-143691200	Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr3:143689400-143691400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:143689400-143692000	Active TSS	Placenta	Placenta
23	chr3:143689400-143692400	Active TSS	Primary T cells from cord blood	blood
24	chr3:143689400-143692400	Active TSS	Duodenum Mucosa	Duodenum
25	chr3:143689400-143692600	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr3:143689400-143693000	Active TSS	Fetal Kidney	kidney
27	chr3:143689400-143693200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr3:143689400-143693200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:143689400-143693200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:143689400-143693200	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr3:143689400-143693200	Active TSS	Stomach Mucosa	stomach
32	chr3:143689400-143693400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr3:143689400-143693400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr3:143689400-143693400	Active TSS	Colon Smooth Muscle	Colon
35	chr3:143689400-143693400	Active TSS	Psoas Muscle	Psoas
36	chr3:143689400-143693400	Active TSS	Right Ventricle	heart
37	chr3:143689400-143693600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr3:143689400-143693600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr3:143689400-143693600	Active TSS	Fetal Muscle Trunk	muscle
40	chr3:143689400-143693600	Active TSS	Rectal Smooth Muscle	rectum
41	chr3:143689400-143693600	Active TSS	Thymus	Thymus
42	chr3:143689400-143693600	Active TSS	NHDF-Ad	bronchial
43	chr3:143689400-143693800	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr3:143689400-143693800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:143689400-143694000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr3:143689400-143694000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:143689400-143694000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr3:143689400-143694000	Active TSS	Fetal Thymus	thymus
49	chr3:143689400-143694200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:143689400-143694200	Active TSS	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links