Variant report
| Variant | rs1898442 |
|---|---|
| Chromosome Location | chr2:73140124-73140125 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr2:73139966-73140166 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:73133787..73135373-chr2:73138346..73141336,2 | MCF-7 | breast: | |
| 2 | chr2:73135089..73137137-chr2:73140069..73142394,2 | K562 | blood: | |
| 3 | chr2:73132001..73134363-chr2:73139105..73140981,2 | K562 | blood: | |
| 4 | chr2:73113887..73116277-chr2:73139179..73142024,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| EMX1 | TF binding region |
| ENSG00000116096 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10183113 | 0.85[JPT][hapmap] |
| rs10185826 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10196456 | 0.85[JPT][hapmap] |
| rs1048704 | 0.85[JPT][hapmap] |
| rs12473812 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12713779 | 1.00[JPT][hapmap] |
| rs17008495 | 0.82[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs17008501 | 0.85[JPT][hapmap] |
| rs2077586 | 0.85[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2164733 | 0.85[JPT][hapmap] |
| rs2421097 | 0.86[JPT][hapmap] |
| rs34419497 | 1.00[ASN][1000 genomes] |
| rs56986198 | 1.00[ASN][1000 genomes] |
| rs6722190 | 0.89[JPT][hapmap] |
| rs746212 | 0.88[ASN][1000 genomes] |
| rs755409 | 0.85[JPT][hapmap] |
| rs999494 | 1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532723 | chr2:73088191-73219259 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv874266 | chr2:73137991-73220138 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
