Variant report

Variant	rs755409
Chromosome Location	chr2:73170730-73170731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73162556..73166677-chr2:73167380..73171144,3	MCF-7	breast:
2	chr2:73170100..73172155-chr2:73477067..73479538,2	K562	blood:
3	chr2:73165807..73168503-chr2:73169231..73171045,2	K562	blood:
4	chr2:73162249..73166255-chr2:73168252..73172179,4	MCF-7	breast:
5	chr2:73170607..73172644-chr2:73173250..73175751,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10183113	0.85[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10185826	0.85[JPT][hapmap]
rs10196456	0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10196568	0.95[ASN][1000 genomes]
rs1048704	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11686652	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12473812	0.85[JPT][hapmap]
rs17008501	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898442	0.85[JPT][hapmap]
rs2164733	0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59833760	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59924850	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728203	0.95[ASN][1000 genomes]
rs6748324	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6757051	0.95[ASN][1000 genomes]
rs73945638	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs999494	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532723	chr2:73088191-73219259	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv874266	chr2:73137991-73220138	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73161400-73210200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr2:73164000-73171200	Weak transcription	Brain Germinal Matrix	brain
3	chr2:73164200-73179000	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:73164400-73182800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:73164400-73190600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:73164400-73192800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:73164400-73193000	Weak transcription	Ovary	ovary
8	chr2:73164400-73193600	Weak transcription	Brain Angular Gyrus	brain
9	chr2:73165000-73175800	Weak transcription	Esophagus	oesophagus
10	chr2:73166200-73210000	Weak transcription	Colonic Mucosa	Colon
11	chr2:73166800-73172600	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:73166800-73182400	Weak transcription	Fetal Lung	lung
13	chr2:73167200-73174400	Strong transcription	Spleen	Spleen
14	chr2:73167200-73178400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:73167600-73170800	Weak transcription	Primary T cells from cord blood	blood
16	chr2:73167600-73207400	Weak transcription	A549	lung
17	chr2:73167800-73170800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:73167800-73171200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr2:73167800-73176000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:73168200-73174200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:73168200-73177200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:73168200-73181000	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:73168400-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:73168600-73172000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr2:73168600-73172000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr2:73168600-73175800	Strong transcription	Liver	Liver
27	chr2:73168600-73182400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr2:73168800-73172000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr2:73168800-73172400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr2:73168800-73173000	Strong transcription	Fetal Stomach	stomach
31	chr2:73168800-73174200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr2:73168800-73177000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:73168800-73177600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr2:73168800-73178200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:73168800-73226800	Weak transcription	NHLF	lung
36	chr2:73169000-73172200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:73169000-73173000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:73169000-73183200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr2:73169000-73191800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:73169200-73170800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:73169200-73172600	Strong transcription	Gastric	stomach
42	chr2:73169200-73177400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr2:73169200-73177600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr2:73169200-73178400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr2:73169200-73198200	Weak transcription	Brain Substantia Nigra	brain
46	chr2:73169200-73210600	Weak transcription	Pancreas	Pancrea
47	chr2:73169400-73170800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr2:73169400-73172200	Strong transcription	Right Ventricle	heart
49	chr2:73169600-73171600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr2:73169600-73173400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links