Variant report

Variant	rs59833760
Chromosome Location	chr2:73170063-73170064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:73162556..73166677-chr2:73167380..73171144,3	MCF-7	breast:
2	chr2:73165807..73168503-chr2:73169231..73171045,2	K562	blood:
3	chr2:73162249..73166255-chr2:73168252..73172179,4	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10183113	0.92[ASN][1000 genomes]
rs10196456	0.95[ASN][1000 genomes]
rs10196568	0.95[ASN][1000 genomes]
rs1048704	0.97[ASN][1000 genomes]
rs11686652	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17008501	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164733	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59924850	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728203	0.95[ASN][1000 genomes]
rs6748324	0.95[ASN][1000 genomes]
rs6757051	0.95[ASN][1000 genomes]
rs73945638	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs755409	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532723	chr2:73088191-73219259	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv874266	chr2:73137991-73220138	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73159800-73170600	Weak transcription	Aorta	Aorta
2	chr2:73161400-73210200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:73163800-73170400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:73164000-73171200	Weak transcription	Brain Germinal Matrix	brain
5	chr2:73164200-73179000	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:73164400-73182800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:73164400-73190600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:73164400-73192800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:73164400-73193000	Weak transcription	Ovary	ovary
10	chr2:73164400-73193600	Weak transcription	Brain Angular Gyrus	brain
11	chr2:73164800-73170200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:73165000-73175800	Weak transcription	Esophagus	oesophagus
13	chr2:73165400-73170600	Weak transcription	Adipose Nuclei	Adipose
14	chr2:73166200-73170200	Weak transcription	Brain Anterior Caudate	brain
15	chr2:73166200-73210000	Weak transcription	Colonic Mucosa	Colon
16	chr2:73166400-73170200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:73166800-73170400	Strong transcription	Fetal Intestine Large	intestine
18	chr2:73166800-73170600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr2:73166800-73172600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr2:73166800-73182400	Weak transcription	Fetal Lung	lung
21	chr2:73167200-73174400	Strong transcription	Spleen	Spleen
22	chr2:73167200-73178400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:73167400-73170400	Strong transcription	Fetal Intestine Small	intestine
24	chr2:73167600-73170600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:73167600-73170800	Weak transcription	Primary T cells from cord blood	blood
26	chr2:73167600-73207400	Weak transcription	A549	lung
27	chr2:73167800-73170400	Weak transcription	Duodenum Mucosa	Duodenum
28	chr2:73167800-73170800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:73167800-73171200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:73167800-73176000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:73168200-73174200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:73168200-73177200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:73168200-73181000	Weak transcription	Fetal Muscle Leg	muscle
34	chr2:73168400-73170400	Weak transcription	Placenta	Placenta
35	chr2:73168400-73182000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:73168600-73172000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:73168600-73172000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:73168600-73175800	Strong transcription	Liver	Liver
39	chr2:73168600-73182400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:73168800-73170200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr2:73168800-73172000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr2:73168800-73172400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr2:73168800-73173000	Strong transcription	Fetal Stomach	stomach
44	chr2:73168800-73174200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr2:73168800-73177000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr2:73168800-73177600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr2:73168800-73178200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:73168800-73226800	Weak transcription	NHLF	lung
49	chr2:73169000-73172200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr2:73169000-73173000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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