Variant report

Variant	rs189888874
Chromosome Location	chr21:15856293-15856294
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15848084..15850910-chr21:15854606..15856566,4	K562	blood:
2	chr21:15848828..15851671-chr21:15855558..15857437,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15847800-15874800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:15851600-15856400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr21:15852400-15860400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
6	chr21:15854200-15857400	ZNF genes & repeats	GM12878-XiMat	blood
7	chr21:15854600-15857000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr21:15854600-15867600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr21:15854600-15868600	Weak transcription	Fetal Thymus	thymus
10	chr21:15854800-15860400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr21:15854800-15864800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr21:15854800-15867600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr21:15854800-15875600	Weak transcription	Thymus	Thymus
14	chr21:15855200-15860600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr21:15855200-15867000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr21:15855400-15867200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr21:15855400-15869000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr21:15855400-15871000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr21:15855600-15857400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr21:15855600-15859000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr21:15855600-15859200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr21:15855600-15860400	Weak transcription	Primary T cells from cord blood	blood
23	chr21:15855600-15865200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr21:15855800-15856600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr21:15855800-15858200	Weak transcription	Dnd41	blood
26	chr21:15855800-15860200	Weak transcription	K562	blood
27	chr21:15855800-15860400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr21:15855800-15860400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr21:15856200-15856400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr21:15856200-15861000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr21:15856200-15861800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr21:15856200-15863600	Weak transcription	Primary B cells from cord blood	blood
33	chr21:15856200-15875400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links