Variant report

Variant	rs189941998
Chromosome Location	chr9:104499498-104499499
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104493214..104495968-chr9:104498085..104500159,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1046590	chr9:104450624-104848588	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046614	chr9:104492314-104686326	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1054992	chr9:104494816-104771134	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1043967	chr9:104498664-104636328	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104494200-104499600	Weak transcription	Liver	Liver
2	chr9:104497800-104500000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:104497800-104501200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:104498600-104499600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
5	chr9:104498800-104499600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr9:104499000-104499600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr9:104499000-104499600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:104499000-104499600	Bivalent/Poised TSS	Left Ventricle	heart
9	chr9:104499000-104499600	Bivalent/Poised TSS	Right Ventricle	heart
10	chr9:104499000-104500200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
11	chr9:104499000-104501200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
12	chr9:104499200-104499600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
13	chr9:104499200-104501000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
14	chr9:104499200-104501000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
15	chr9:104499400-104499600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr9:104499400-104499600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:104499400-104499600	Bivalent Enhancer	Brain Anterior Caudate	brain
18	chr9:104499400-104499600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr9:104499400-104499600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr9:104499400-104499600	Flanking Bivalent TSS/Enh	Fetal Heart	heart
21	chr9:104499400-104499600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chr9:104499400-104500000	Enhancers	Pancreas	Pancrea
23	chr9:104499400-104500200	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr9:104499400-104500200	Flanking Active TSS	Ovary	ovary
25	chr9:104499400-104500400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
26	chr9:104499400-104500600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
27	chr9:104499400-104500600	Bivalent Enhancer	Fetal Brain Male	brain
28	chr9:104499400-104501000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
29	chr9:104499400-104501600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell

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