Variant report

Variant	rs189976
Chromosome Location	chr6:164443781-164443782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs205986	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs205988	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs205989	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs205991	0.92[EUR][1000 genomes]
rs34113046	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs412729	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4709808	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4709809	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4709812	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4709813	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4709814	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs85750	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs85751	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9355452	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1019703	chr6:164424683-164488780	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1796945	chr6:164430826-164448156	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164439200-164444600	Weak transcription	Fetal Heart	heart
2	chr6:164442200-164446400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164442400-164444000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:164442600-164443800	Enhancers	Right Ventricle	heart
5	chr6:164442600-164444200	Enhancers	Adipose Nuclei	Adipose
6	chr6:164442800-164444000	Enhancers	Placenta	Placenta
7	chr6:164442800-164444000	Enhancers	Psoas Muscle	Psoas
8	chr6:164442800-164444400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:164442800-164444400	Enhancers	Brain Germinal Matrix	brain
10	chr6:164442800-164444400	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:164442800-164444600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:164443000-164443800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:164443000-164444000	Enhancers	Fetal Brain Male	brain
14	chr6:164443000-164444200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:164443000-164446000	Weak transcription	Right Atrium	heart
16	chr6:164443200-164459000	Weak transcription	Spleen	Spleen
17	chr6:164443400-164445000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr6:164443400-164447000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:164443400-164447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:164443600-164444000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr6:164443600-164444000	Enhancers	HSMMtube	muscle

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